Error message in compiling 8.8.1
Posted: Tue May 08, 2018 9:39 am
I am always amazed and grateful when abinit compiles without error, but for 8.8.1, the script I have been using for several previous versions failed. The compile script that failed is:
-----------------
#!/bin/tcsh
source /etc/profile.d/modules.csh
module load openmpi/1.6-intel
../configure --prefix=/home/natalie/EL6/publiccode/abinit/abinit-8.8.1 --exec-prefix=/home/natalie/EL6/publiccode/abinit/abinit-8.8.1 --enable-mpi --with-mpi- prefix=/deac/opt/openmpi/1.6-intel --with-fft-flavor=fftw3-mkl --with-linalg-flavor=mkl --with-dft-flavor=libxc --with-trio-flavor=netcdf FC=mpif90 CC=mpicc CPP='mpicc -E --no-create --no-recursion'
make
make install
--------------------------------
Several modules compiled correctly, but the error occurred in 78_eph. Thanks in advance for any suggestions. I cannot upload the full log file, but the bottom of the file looks like:
------------------------
make[2]: Leaving directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd
/src/78_effpot'
Making install in 78_eph
make[2]: Entering directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cm
d/src/78_eph'
mpif90 -DHAVE_CONFIG_H -I. -I../../../src/78_eph -I../.. -I../../src/77_ddb -I.
./../../src/77_ddb -I../../src/59_ionetcdf -I../../../src/59_ionetcdf -I../../sr
c/27_toolbox_oop -I../../../src/27_toolbox_oop -I../../src/42_libpaw -I../../../
src/42_libpaw -I../../src/72_response -I../../../src/72_response -I../../src/66_
nonlocal -I../../../src/66_nonlocal -I../../src/17_libtetra_ext -I../../../src/1
7_libtetra_ext -I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot -I../../sr
c/18_timing -I../../../src/18_timing -I../../src/12_hide_mpi -I../../../src/12_h
ide_mpi -I../../src/14_hidewrite -I../../../src/14_hidewrite -I../../src/69_wfde
sc -I../../../src/69_wfdesc -I../../src/32_util -I../../../src/32_util -I../../s
rc/28_numeric_noabirule -I../../../src/28_numeric_noabirule -I../../src/44_abity
pes_defs -I../../../src/44_abitypes_defs -I../../src/61_occeig -I../../../src/61
_occeig -I../../src/16_hideleave -I../../../src/16_hideleave -I../../src/65_paw
-I../../../src/65_paw -I../../src/56_recipspace -I../../../src/56_recipspace -I.
./../src/52_fft_mpi_noabirule -I../../../src/52_fft_mpi_noabirule -I../../src/66
_wfs -I../../../src/66_wfs -I../../src/41_geometry -I../../../src/41_geometry -I
../../src/11_memory_mpi -I../../../src/11_memory_mpi -I../../src/10_defs -I../..
/../src/10_defs -I../../src/53_ffts -I../../../src/53_ffts -I../../src/incs -I..
/../../src/incs -I/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/fallbacks
/exports/include -I/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/fallbacks/exports/include -free -module /home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/src/mods -O3 -g -extend-source -vec-report0 -noaltparam -nofpscomp -c -o m_sigmaph.o ../../../src/78_eph/m_sigmaph.F90
../../../src/78_eph/m_sigmaph.F90(2389): error #5274: Token incorrectly continued across lines
netcdf_check(nf90_put_var(self%ncid, nctk_idname(self%ncid, "vals_e0ks"), c2r(self%vals_e0ks), start=[1,1,1,ikcalc,spin]),"No msg from caller"&
^
../../../src/78_eph/m_sigmaph.F90(2413): error #5274: Token incorrectly continued across lines
netcdf_check(nf90_put_var(self%ncid, nctk_idname(self%ncid, "vals_wr"), c2r(self%vals_wr), start=[1,1,1,1,ikcalc,spin]),"No msg from caller"&
^
compilation aborted for ../../../src/78_eph/m_sigmaph.F90 (code 1)
make[2]: *** [m_sigmaph.o] Error 1
make[2]: Leaving directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/src/78_eph'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/src'
make: *** [install-recursive] Error 1
-----------------
#!/bin/tcsh
source /etc/profile.d/modules.csh
module load openmpi/1.6-intel
../configure --prefix=/home/natalie/EL6/publiccode/abinit/abinit-8.8.1 --exec-prefix=/home/natalie/EL6/publiccode/abinit/abinit-8.8.1 --enable-mpi --with-mpi- prefix=/deac/opt/openmpi/1.6-intel --with-fft-flavor=fftw3-mkl --with-linalg-flavor=mkl --with-dft-flavor=libxc --with-trio-flavor=netcdf FC=mpif90 CC=mpicc CPP='mpicc -E --no-create --no-recursion'
make
make install
--------------------------------
Several modules compiled correctly, but the error occurred in 78_eph. Thanks in advance for any suggestions. I cannot upload the full log file, but the bottom of the file looks like:
------------------------
make[2]: Leaving directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd
/src/78_effpot'
Making install in 78_eph
make[2]: Entering directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cm
d/src/78_eph'
mpif90 -DHAVE_CONFIG_H -I. -I../../../src/78_eph -I../.. -I../../src/77_ddb -I.
./../../src/77_ddb -I../../src/59_ionetcdf -I../../../src/59_ionetcdf -I../../sr
c/27_toolbox_oop -I../../../src/27_toolbox_oop -I../../src/42_libpaw -I../../../
src/42_libpaw -I../../src/72_response -I../../../src/72_response -I../../src/66_
nonlocal -I../../../src/66_nonlocal -I../../src/17_libtetra_ext -I../../../src/1
7_libtetra_ext -I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot -I../../sr
c/18_timing -I../../../src/18_timing -I../../src/12_hide_mpi -I../../../src/12_h
ide_mpi -I../../src/14_hidewrite -I../../../src/14_hidewrite -I../../src/69_wfde
sc -I../../../src/69_wfdesc -I../../src/32_util -I../../../src/32_util -I../../s
rc/28_numeric_noabirule -I../../../src/28_numeric_noabirule -I../../src/44_abity
pes_defs -I../../../src/44_abitypes_defs -I../../src/61_occeig -I../../../src/61
_occeig -I../../src/16_hideleave -I../../../src/16_hideleave -I../../src/65_paw
-I../../../src/65_paw -I../../src/56_recipspace -I../../../src/56_recipspace -I.
./../src/52_fft_mpi_noabirule -I../../../src/52_fft_mpi_noabirule -I../../src/66
_wfs -I../../../src/66_wfs -I../../src/41_geometry -I../../../src/41_geometry -I
../../src/11_memory_mpi -I../../../src/11_memory_mpi -I../../src/10_defs -I../..
/../src/10_defs -I../../src/53_ffts -I../../../src/53_ffts -I../../src/incs -I..
/../../src/incs -I/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/fallbacks
/exports/include -I/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/fallbacks/exports/include -free -module /home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/src/mods -O3 -g -extend-source -vec-report0 -noaltparam -nofpscomp -c -o m_sigmaph.o ../../../src/78_eph/m_sigmaph.F90
../../../src/78_eph/m_sigmaph.F90(2389): error #5274: Token incorrectly continued across lines
netcdf_check(nf90_put_var(self%ncid, nctk_idname(self%ncid, "vals_e0ks"), c2r(self%vals_e0ks), start=[1,1,1,ikcalc,spin]),"No msg from caller"&
^
../../../src/78_eph/m_sigmaph.F90(2413): error #5274: Token incorrectly continued across lines
netcdf_check(nf90_put_var(self%ncid, nctk_idname(self%ncid, "vals_wr"), c2r(self%vals_wr), start=[1,1,1,1,ikcalc,spin]),"No msg from caller"&
^
compilation aborted for ../../../src/78_eph/m_sigmaph.F90 (code 1)
make[2]: *** [m_sigmaph.o] Error 1
make[2]: Leaving directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/src/78_eph'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/home/natalie/EL6/publiccode/abinit/abinit-8.8.1/cmd/src'
make: *** [install-recursive] Error 1