Hi, everyone.
When I try to build the abinit-7.10.5 with Openmpi 1.10.2,
even if I enable mpi, it seems that I always got the sequential version instead of the parallel one.
The sequential abinit works well, but when I run the parallel version with command like "mpirun -np $num abinit < ......"
Abinit stop at the beginning with such message:
Give name for formatted input file:
I am sure the PATH and LD_LIBRARY_PATH are set correctly:
[kinsang@c0 Config]$ mpirun --version
mpirun (Open MPI) 1.10.2
[kinsang@c0 Config]$ mpicc --version
icc (ICC) 16.0.2 20160204
Copyright (C) 1985-2016 Intel Corporation. All rights reserved.
The configure file is as follows:
FC=mpifort
CC=mpicc
CXX=mpicxx
enable_mpi="yes"
enable_mpi_io="yes"
with_mpi_prefix="/public/soft/ompi-v1.10"
Thanks a lot !!!
Enclosing with the Conf.log
Emergency. The parallel 7.10.5 can't be build with openmpi
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Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Emergency. The parallel 7.10.5 can't be build with openmpi
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Re: Emergency. The parallel 7.10.5 can't be build with openm
Hi
You do have the parallel version of abinit. See your log file
The code stop because of your mpi environment. The mpirun does not how to handle the stdin stream there for it waits for the user input.
Basically you should read the sentence and thus type the input file name
then you'll be ask the output file name and so on.
Those names are exactly, line by line what is in you files file.
If you run abinit with mpirun -np $num abinit, you'll have exactly the same behaviour.
Ask you admin to explain to you how to run the mpirun with stream redirection like "< files" (you should be on a filesystem readable by all mpi processes) or if you are the admin, check you mpi compilation.
Cheers
Jordan
You do have the parallel version of abinit. See your log file
Code: Select all
* MPI enabled : yes
* MPI-IO enabled : yes
The code stop because of your mpi environment. The mpirun does not how to handle the stdin stream there for it waits for the user input.
Basically you should read the sentence and thus type the input file name
then you'll be ask the output file name and so on.
Those names are exactly, line by line what is in you files file.
If you run abinit with mpirun -np $num abinit, you'll have exactly the same behaviour.
Ask you admin to explain to you how to run the mpirun with stream redirection like "< files" (you should be on a filesystem readable by all mpi processes) or if you are the admin, check you mpi compilation.
Cheers
Jordan