Abinit 8.10.3 on Linux Mint, newbie question about netcdf

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Abinit 8.10.3 on Linux Mint, newbie question about netcdf

Postby quantumNoob » Mon Jul 15, 2019 2:07 pm

Hi all,

I'm quite a Linux newbie and I am having a hard time figuring out what's necessary and what's not to install abinit.

I'm following this tutorial: https://www.youtube.com/watch?v=DppLQ-KQA68 together with viewtopic.php?f=2&t=2807#

I'm now trying to do the ac file, but I don't find the file netcdf.inc , also in the video above there you can see there are also netcdfcpp.h netcdf.hh and a netcdf.mod file.

Only these lines with netcdf fles are in my /usr directory:

-rw-r--r-- 1 root root 66K Jan 25 2018 netcdf.h
-rw-r--r-- 1 root root 520 Jan 25 2018 netcdf_mem.h
-rw-r--r-- 1 root root 2,2K Feb 9 2018 netcdf_meta.h

So, how do I proceed? ;)

If my question is unclear, feel free to mention it.

Thanks in advance!


EDIT:

I couldn't resist to wait for an answer and I went along these instructions https://docs.abinit.org/installation/#1b-normal-user , so just

Code: Select all
Supposing that you are in the lucky case where the build system is able to find all the information, then the build of ABINIT is very simple. Issue:

    configure or ./configure (or first create a tmp directory, then cd tmp, then ../configure)
    make (or make mj4 , or make multi multi_nprocs=n for using “n” processors on a SMP machine where you have to replace “n” by its value)
    (optionally) make install


So far so good, but I went on to do the tests and BigDFT failed, this is bad right?

Code: Select all
make tests_in
make test_fast test_v1 test_v5 test_bigdft test_etsf_io test_libxc test_wannier90
make[1]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/build'
cp ./src/98_main/abinit ../tests/built-in/Input/abinit && cd ../tests/built-in/Input && ./abinit < testin_fast.files >& testin_fast.stdout && cat testin_fast_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test fast

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

cp ./src/98_main/abinit ../tests/built-in/Input/abinit && cd ../tests/built-in/Input && ./abinit < testin_v1.files >& testin_v1.stdout && cat testin_v1_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test v1

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

cp ./src/98_main/abinit ../tests/built-in/Input/abinit && cd ../tests/built-in/Input && ./abinit < testin_v5.files >& testin_v5.stdout && cat testin_v5_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test v5

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

cp ./src/98_main/abinit ../tests/built-in/Input/abinit && cd ../tests/built-in/Input && ./abinit < testin_bigdft.files >& testin_bigdft.stdout && cat testin_bigdft_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK
Makefile:2774: recipe for target 'test_bigdft' failed
make[1]: *** [test_bigdft] Error 1
make[1]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/build'
Makefile:2786: recipe for target 'tests_in' failed
make: *** [tests_in] Error 2



EDIT 2:

I tried to do another install

This is what I got at the end:

Code: Select all
==============================================================================
Keywords to use with the make command for abichecks tests directory:

tests_abirules     Launch the abirules tests
                   Warning: for some of the tests, the file make.log
                   must be present in the top directory. This means one has
                   to compile with the command: `make > make.log 2>&1`
tests_buildsys     Launch the buildsys tests

==============================================================================
[This file can be found at doc/help_make/help_make_abichecks.txt]
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/abichecks'
Making all in tests
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/tests'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/tests'
==============================================================================

Issue `make check` to run a subset of tests (fast tests)

Use the script `runtests.py` located in ~abinit/tests to validate the build
(requires python 2.7 or python >= 3.4)

To get help, cd to ~abinit/tests and issue:
   
    $ ./runtests.py --help

To run the test suite inside a build directory (e.g. ~abinit/build/tests), use:

    $ ../../tests/runtests.py

This will create a directory build/tests/Test_suite with the results of the tests.

Useful option when using manually the test suite:

    $ ../../tests/runtests.py -t0

which disables the timeout routine

To add a new test, please consult:

    https://docs.abinit.org/developers/testsuite_howto

==============================================================================
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/tests'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/tests'
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3'
make[1]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3'
Making install in fallbacks
make[1]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
make libxc
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
The build of libxc has been disabled
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of libxc fallback
test -e stamps/libxc-install-stamp
make linalg
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
make[2]: Nothing to be done for 'linalg'.
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of linalg fallback
test -e stamps/linalg-install-stamp
make netcdf
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
The build of netcdf has been disabled
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of netcdf fallback
test -e stamps/netcdf-install-stamp
make atompaw
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
The build of atompaw has been disabled
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of atompaw fallback
test -e stamps/atompaw-install-stamp
make wannier90
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
The build of wannier90 has been disabled
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of wannier90 fallback
test -e stamps/wannier90-install-stamp
make etsf_io
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
The build of etsf_io has been disabled
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of etsf_io fallback
test -e stamps/etsf_io-install-stamp
make bigdft
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
The build of bigdft has been disabled
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Checking build of bigdft fallback
test -e stamps/bigdft-install-stamp
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
make[1]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/fallbacks'
Making install in src
make[1]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src'
Making install in incs
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/incs'
There is no buildable file here
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/incs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/incs'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/incs'
Making install in mods
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/mods'
There is no buildable file here
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/mods'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/mods'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/mods'
Making install in 02_clib
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/02_clib'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/02_clib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/02_clib'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/02_clib'
Making install in 10_defs
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_defs'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_defs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_defs'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_defs'
Making install in 10_dumpinfo
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_dumpinfo'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_dumpinfo'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_dumpinfo'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/10_dumpinfo'
Making install in 11_memory_mpi
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/11_memory_mpi'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/11_memory_mpi'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/11_memory_mpi'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/11_memory_mpi'
Making install in 12_hide_mpi
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/12_hide_mpi'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/12_hide_mpi'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/12_hide_mpi'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/12_hide_mpi'
Making install in 14_hidewrite
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/14_hidewrite'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/14_hidewrite'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/14_hidewrite'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/14_hidewrite'
Making install in 16_hideleave
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/16_hideleave'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/16_hideleave'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/16_hideleave'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/16_hideleave'
Making install in 17_libtetra_ext
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/17_libtetra_ext'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/17_libtetra_ext'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/17_libtetra_ext'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/17_libtetra_ext'
Making install in 18_timing
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/18_timing'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/18_timing'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/18_timing'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/18_timing'
Making install in 21_hashfuncs
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/21_hashfuncs'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/21_hashfuncs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/21_hashfuncs'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/21_hashfuncs'
Making install in 27_toolbox_oop
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/27_toolbox_oop'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/27_toolbox_oop'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/27_toolbox_oop'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/27_toolbox_oop'
Making install in 28_numeric_noabirule
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/28_numeric_noabirule'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/28_numeric_noabirule'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/28_numeric_noabirule'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/28_numeric_noabirule'
Making install in 29_kpoints
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/29_kpoints'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/29_kpoints'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/29_kpoints'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/29_kpoints'
Making install in 32_util
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/32_util'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/32_util'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/32_util'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/32_util'
Making install in 41_geometry
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_geometry'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_geometry'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_geometry'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_geometry'
Making install in 41_xc_lowlevel
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_xc_lowlevel'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_xc_lowlevel'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_xc_lowlevel'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/41_xc_lowlevel'
Making install in 42_libpaw
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_libpaw'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_libpaw'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_libpaw'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_libpaw'
Making install in 42_nlstrain
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_nlstrain'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_nlstrain'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_nlstrain'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_nlstrain'
Making install in 42_parser
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_parser'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_parser'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_parser'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/42_parser'
Making install in 43_ptgroups
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_ptgroups'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_ptgroups'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_ptgroups'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_ptgroups'
Making install in 43_wvl_wrappers
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_wvl_wrappers'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_wvl_wrappers'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_wvl_wrappers'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/43_wvl_wrappers'
Making install in 44_abitools
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitools'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitools'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitools'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitools'
Making install in 44_abitypes_defs
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitypes_defs'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitypes_defs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitypes_defs'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/44_abitypes_defs'
Making install in 45_geomoptim
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_geomoptim'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_geomoptim'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_geomoptim'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_geomoptim'
Making install in 45_xgTools
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_xgTools'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_xgTools'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_xgTools'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/45_xgTools'
Making install in 46_diago
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/46_diago'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/46_diago'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/46_diago'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/46_diago'
Making install in 49_gw_toolbox_oop
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/49_gw_toolbox_oop'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/49_gw_toolbox_oop'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/49_gw_toolbox_oop'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/49_gw_toolbox_oop'
Making install in 51_manage_mpi
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/51_manage_mpi'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/51_manage_mpi'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/51_manage_mpi'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/51_manage_mpi'
Making install in 52_fft_mpi_noabirule
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/52_fft_mpi_noabirule'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/52_fft_mpi_noabirule'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/52_fft_mpi_noabirule'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/52_fft_mpi_noabirule'
Making install in 53_ffts
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/53_ffts'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/53_ffts'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/53_ffts'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/53_ffts'
Making install in 54_spacepar
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/54_spacepar'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/54_spacepar'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/54_spacepar'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/54_spacepar'
Making install in 55_abiutil
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/55_abiutil'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/55_abiutil'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/55_abiutil'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/55_abiutil'
Making install in 56_io_mpi
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_io_mpi'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_io_mpi'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_io_mpi'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_io_mpi'
Making install in 56_mixing
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_mixing'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_mixing'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_mixing'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_mixing'
Making install in 56_recipspace
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_recipspace'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_recipspace'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_recipspace'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_recipspace'
Making install in 56_xc
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_xc'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_xc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_xc'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/56_xc'
Making install in 57_iopsp_parser
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iopsp_parser'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iopsp_parser'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iopsp_parser'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iopsp_parser'
Making install in 57_iovars
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iovars'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iovars'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iovars'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/57_iovars'
Making install in 59_ionetcdf
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/59_ionetcdf'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/59_ionetcdf'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/59_ionetcdf'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/59_ionetcdf'
Making install in 61_occeig
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/61_occeig'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/61_occeig'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/61_occeig'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/61_occeig'
Making install in 62_cg_noabirule
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_cg_noabirule'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_cg_noabirule'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_cg_noabirule'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_cg_noabirule'
Making install in 62_ctqmc
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_ctqmc'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_ctqmc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_ctqmc'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_ctqmc'
Making install in 62_iowfdenpot
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_iowfdenpot'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_iowfdenpot'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_iowfdenpot'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_iowfdenpot'
Making install in 62_poisson
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_poisson'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_poisson'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_poisson'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_poisson'
Making install in 62_wvl_wfs
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_wvl_wfs'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_wvl_wfs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_wvl_wfs'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/62_wvl_wfs'
Making install in 63_bader
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/63_bader'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/63_bader'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/63_bader'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/63_bader'
Making install in 64_psp
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/64_psp'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/64_psp'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/64_psp'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/64_psp'
Making install in 65_paw
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/65_paw'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/65_paw'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/65_paw'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/65_paw'
Making install in 66_nonlocal
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_nonlocal'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_nonlocal'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_nonlocal'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_nonlocal'
Making install in 66_vdwxc
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_vdwxc'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_vdwxc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_vdwxc'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_vdwxc'
Making install in 66_wfs
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_wfs'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_wfs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_wfs'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/66_wfs'
Making install in 67_common
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/67_common'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/67_common'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/67_common'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/67_common'
Making install in 68_dmft
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_dmft'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_dmft'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_dmft'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_dmft'
Making install in 68_recursion
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_recursion'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_recursion'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_recursion'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_recursion'
Making install in 68_rsprc
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_rsprc'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_rsprc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_rsprc'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/68_rsprc'
Making install in 69_wfdesc
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/69_wfdesc'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/69_wfdesc'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/69_wfdesc'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/69_wfdesc'
Making install in 70_gw
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/70_gw'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/70_gw'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/70_gw'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/70_gw'
Making install in 71_bse
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_bse'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_bse'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_bse'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_bse'
Making install in 71_wannier
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_wannier'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_wannier'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_wannier'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/71_wannier'
Making install in 72_response
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/72_response'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/72_response'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/72_response'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/72_response'
Making install in 77_ddb
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_ddb'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_ddb'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_ddb'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_ddb'
Making install in 77_suscep
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_suscep'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_suscep'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_suscep'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/77_suscep'
Making install in 78_effpot
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_effpot'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_effpot'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_effpot'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_effpot'
Making install in 78_eph
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_eph'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_eph'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_eph'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/78_eph'
Making install in 79_seqpar_mpi
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/79_seqpar_mpi'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/79_seqpar_mpi'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/79_seqpar_mpi'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/79_seqpar_mpi'
Making install in 80_tdep
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/80_tdep'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/80_tdep'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/80_tdep'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/80_tdep'
Making install in 83_cut3d
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/83_cut3d'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/83_cut3d'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/83_cut3d'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/83_cut3d'
Making install in 84_fold2Bloch
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/84_fold2Bloch'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/84_fold2Bloch'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/84_fold2Bloch'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/84_fold2Bloch'
Making install in 94_scfcv
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/94_scfcv'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/94_scfcv'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/94_scfcv'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/94_scfcv'
Making install in 95_drive
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/95_drive'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/95_drive'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/95_drive'
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/95_drive'
Making install in 98_main
make[2]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/98_main'
make[3]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/98_main'
 /bin/mkdir -p '/usr/local/bin'
  /usr/bin/install -c abinit aim anaddb band2eps bsepostproc conducti cut3d dummy_tests fftprof fold2Bloch ioprof lapackprof mrgddb mrgdv mrggkk mrgscr multibinit optic tdep ujdet vdw_kernelgen macroave '/usr/local/bin'
/usr/bin/install: cannot create regular file '/usr/local/bin/abinit': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/aim': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/anaddb': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/band2eps': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/bsepostproc': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/conducti': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/cut3d': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/dummy_tests': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/fftprof': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/fold2Bloch': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/ioprof': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/lapackprof': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/mrgddb': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/mrgdv': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/mrggkk': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/mrgscr': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/multibinit': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/optic': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/tdep': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/ujdet': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/vdw_kernelgen': Permission denied
/usr/bin/install: cannot create regular file '/usr/local/bin/macroave': Permission denied
Makefile:3897: recipe for target 'install-binPROGRAMS' failed
make[3]: *** [install-binPROGRAMS] Error 1
make[3]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/98_main'
Makefile:4269: recipe for target 'install-am' failed
make[2]: *** [install-am] Error 2
make[2]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src/98_main'
Makefile:934: recipe for target 'install-recursive' failed
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3/src'
Makefile:2323: recipe for target 'install-recursive' failed
make: *** [install-recursive] Error 1


Code: Select all
tv@tv-System-Product-Name:~/Desktop/Programs/abinit-8.10.3$ make test_fast
cp ./src/98_main/abinit ./tests/built-in/Input/abinit && cd ./tests/built-in/Input && ./abinit < testin_fast.files >& testin_fast.stdout && cat testin_fast_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test fast

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

tv@tv-System-Product-Name:~/Desktop/Programs/abinit-8.10.3$ make tests_in
make test_fast test_v1 test_v5 test_bigdft test_etsf_io test_libxc test_wannier90
make[1]: Entering directory '/home/tv/Desktop/Programs/abinit-8.10.3'
cp ./src/98_main/abinit ./tests/built-in/Input/abinit && cd ./tests/built-in/Input && ./abinit < testin_fast.files >& testin_fast.stdout && cat testin_fast_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test fast

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

cp ./src/98_main/abinit ./tests/built-in/Input/abinit && cd ./tests/built-in/Input && ./abinit < testin_v1.files >& testin_v1.stdout && cat testin_v1_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test v1

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

cp ./src/98_main/abinit ./tests/built-in/Input/abinit && cd ./tests/built-in/Input && ./abinit < testin_v5.files >& testin_v5.stdout && cat testin_v5_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK

 Status file, reporting on built-in test v5

 ==> The run finished cleanly.
     Moreover, comparison of the total energy, and other (few) relevant quantities with reference values has been successful.
     This does not mean that no problem is present, however.
     Please run the complete set of ABINIT tests to gain a better confidence in your installation.

cp ./src/98_main/abinit ./tests/built-in/Input/abinit && cd ./tests/built-in/Input && ./abinit < testin_bigdft.files >& testin_bigdft.stdout && cat testin_bigdft_tmp_STATUS && rm -f abinit *DDB *EIG *out* *nc *WFK
Makefile:2774: recipe for target 'test_bigdft' failed
make[1]: *** [test_bigdft] Error 1
make[1]: Leaving directory '/home/tv/Desktop/Programs/abinit-8.10.3'
Makefile:2786: recipe for target 'tests_in' failed
make: *** [tests_in] Error 2


:shock: :?

Should I throw Mint off my system and install Ubuntu and try again?
quantumNoob
 
Posts: 2
Joined: Mon Jul 15, 2019 1:34 pm

Re: Abinit 8.10.3 on Linux Mint, newbie question about netcd

Postby quantumNoob » Wed Jul 17, 2019 3:30 pm

Hi again

I installed Ubuntu 18.04,

Now I again want to install abinit, following this tutorial:


https://www.youtube.com/watch?v=DppLQ-KQA68

I installed all the packages listed in viewtopic.php?f=2&t=2639

But I had to change this:

Code: Select all
sudo apt-get -y install libatlas-base-dev  libatlas3gf-base
sudo apt-get -y install liblapack3gf liblapack-dev
sudo apt-get -y install libblas3gf libblas-dev


into this (remove the gf, since otherwise they wouldn't find the package:

Code: Select all
sudo apt-get -y install libatlas-base-dev  libatlas3-base
sudo apt-get -y install liblapack3 liblapack-dev
sudo apt-get -y install libblas3 libblas-dev


using this ac file:

Code: Select all
prefix="/usr/local"
enable_mpi="yes"
enable_mpi_io="yes"
with_mpi_prefix="/usr"
with_trio_flavor="netcdf+etsf_io"
with_netcdf_incs="-I/usr/include"
with_netcdf_libs="-L/usr/lib -lnetcdf -lnetcdff"
with_etsf_io_incs="-I/usr/include"
with_etsf_io_libs="-L/usr/lib -letsf_io_low_level -letsf_io_utils -letsf_io"
with_fft_flavor="fftw3"
with_fft_incs="-I/usr/include/"
with_fft_libs="-L/usr/lib/x86-64-linux-gnu/ -lfftw3 -lfftw3f"
with_linalg_flavor="atlas"
with_linalg_libs="-L/usr/lib64 -llapack -lf77blas -lcblas -latlas"
with_dft_flavor="atompaw+libxc"
#with_dft_flavor="atompaw+bigdft+libxc+wannier90"
enable_gw_dpc="yes"



This is the ac file from the sticky minus the 3 last lines like in the Ponce video:

viewtopic.php?f=2&t=2639


In the video Ponce is looking for the libraries, I have the same issue as on Mint, I only see:

Code: Select all
-rw-r--r--  1 root root  66K Jan 25  2018 netcdf.h
-rw-r--r--  1 root root  520 Jan 25  2018 netcdf_mem.h
-rw-r--r--  1 root root 2,2K Feb  9  2018 netcdf_meta.h


I don't see netcdf.inc, netcdf.hh and netcdf.mod.

When I do "locate libnetcdf" I don't see anything.

So I guess that's very wrong.

Then I check for fftw3, I think it is correct, but it is different from the Ponce video:

Code: Select all
tv@tv-System-Product-Name:/$ locate libfftw3
/usr/lib/x86_64-linux-gnu/libfftw3.so.3
/usr/lib/x86_64-linux-gnu/libfftw3.so.3.5.7
/usr/lib/x86_64-linux-gnu/libfftw3_omp.so.3
/usr/lib/x86_64-linux-gnu/libfftw3_omp.so.3.5.7
/usr/lib/x86_64-linux-gnu/libfftw3_threads.so.3
/usr/lib/x86_64-linux-gnu/libfftw3_threads.so.3.5.7
/usr/lib/x86_64-linux-gnu/libfftw3f.so.3
/usr/lib/x86_64-linux-gnu/libfftw3f.so.3.5.7
/usr/lib/x86_64-linux-gnu/libfftw3f_omp.so.3
/usr/lib/x86_64-linux-gnu/libfftw3f_omp.so.3.5.7
/usr/lib/x86_64-linux-gnu/libfftw3f_threads.so.3
/usr/lib/x86_64-linux-gnu/libfftw3f_threads.so.3.5.7




When I do 'locate libatlas" , I don't find anything. So that's wrong.


So netcdf and atlas libraries are not installed or installed incorrectly.

Ponce did not check for the dft libraries so I don't know if my dft libraries are installed correctly, but I would guess they are not since my low success rate.

So to get abinit working I need to install netcdf, atlas and the dft libraries correctly.

Can someone help me? :)
quantumNoob
 
Posts: 2
Joined: Mon Jul 15, 2019 1:34 pm

Re: Abinit 8.10.3 on Linux Mint, newbie question about netcd

Postby ebousquet » Tue Jul 23, 2019 11:20 am

Dear quantumNoob,
The atlas library is a mathematical library (blas and lapack) but you can install them from any other source (gnu, mkl, etc). If you want to go simple (but this is not the most efficient for running production calculations) is to simply do "sudo aptget install libblas-dev liblapack-dev" and they can be linked by adding with_linalg_libs="-L/usr/lib/ -llapack -lblas" in the .ac file (check they are installed in /usr/lib).
For netcdf, libxc, etc, if you just declare you want to install them in your .ac file but do not give a link to them (with_trio_flavor="netcdf") (with_dft_flavor="libxc" for example), Abinit will try to download them and install them automatically. This is strongly recommended to be sure the installed version of these fallbacks are in agreement with your abinit version.
Best wishes,
Eric
ebousquet
 
Posts: 303
Joined: Tue Apr 19, 2011 11:13 am
Location: University of Liege, Belgium


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