Use:
--with-trio-flavor="netcdf"
--with-dft-flavor="wannier90"
For more examples, see
https://github.com/abinit/abiconfig/tre ... g/clusters
Search found 275 matches
- Wed Sep 05, 2018 12:34 am
- Forum: Configuring and compiling ABINIT
- Topic: Can't enable options
- Replies: 2
- Views: 3858
- Wed Aug 01, 2018 10:39 pm
- Forum: Ground state
- Topic: Polarisation for AlAs
- Replies: 2
- Views: 2830
Re: Polarisation for AlAs
--- !ERROR src_file: m_dtset.F90 src_line: 278 mpi_rank: 0 message: | Initialization of occ, with occopt= 1 There are not enough bands to get charge balance right Action: modify input file ... (check the pseudopotential charges, the variable charge, and the declared number of bands, nband) ... You a...
- Fri Jul 20, 2018 1:34 am
- Forum: Link to other codes
- Topic: fully-relativistic PP generation using ATOMIC. [SOLVED]
- Replies: 8
- Views: 36598
Re: fully-relativistic PP generation using ATOMIC. [SOLVED]
http://www.pseudo-dojo.org/
Select type: NC-FR --> Norm Conserving Fully-relativistic pseudos
At present we have PBE and PBEsol in psp8 (abinit), psml and upf format.
Select type: NC-FR --> Norm Conserving Fully-relativistic pseudos
At present we have PBE and PBEsol in psp8 (abinit), psml and upf format.
- Tue Jul 17, 2018 10:08 pm
- Forum: Response calculations
- Topic: the partial Phonon DOS
- Replies: 2
- Views: 3292
- Wed May 16, 2018 12:11 am
- Forum: Other tools and postprocessing in ABINIT
- Topic: The Unit for isovalue in cut3d [SOLVED]
- Replies: 4
- Views: 16539
Re: The Unit for isovalue in cut3d [SOLVED]
From the below page, the density output files (_DEN) seem to be in electrons/Bohr^3. I'm just not sure if I should assume this unit is maintained in .xsf. Yes, the density is in electrons/Bohr^3 (the same units used internally in the code). Note that the lattice vectors and the atomic positions in ...
- Tue May 15, 2018 5:34 pm
- Forum: Ground state
- Topic: DOS energy interval
- Replies: 1
- Views: 1734
Re: DOS energy interval
https://docs.abinit.org/variables/gstate/#dosdeltae
See also https://docs.abinit.org/variables/files/#prtdos
for the option selecting the gaussian/tetrahedron method,
See also https://docs.abinit.org/variables/files/#prtdos
for the option selecting the gaussian/tetrahedron method,
- Mon May 14, 2018 6:21 pm
- Forum: Ground state
- Topic: input charge density generation [SOLVED]
- Replies: 4
- Views: 3797
Re: input charge density generation [SOLVED]
I wanted to use a "manually" generated charge density instead of SCF generated charge density The easiest solution is hacking the code in the part that writes the density in real space (rhor) to file. The density is written by fftdatar_writer at the end of the SCF cycle. m Run a SCF calcu...
- Mon May 14, 2018 5:57 pm
- Forum: Ground state
- Topic: input charge density generation [SOLVED]
- Replies: 4
- Views: 3797
- Mon May 14, 2018 12:10 pm
- Forum: Configuring and compiling ABINIT
- Topic: Abinit 7.6.3 ./runtests.py problem
- Replies: 1
- Views: 2621
Re: Abinit 7.6.3 ./runtests.py problem
-bash: ./runtests.py: No such file or directory This means that runtests.py is not in your current working directory. The script is located in ~abinit/tests/ where ~abinit is your top level directory. If you are using a build directory to compile the code, you have to specify the location of the sc...
- Sun May 13, 2018 9:22 pm
- Forum: Ground state
- Topic: Symmetry in ABINIT
- Replies: 3
- Views: 3237
Re: Symmetry in ABINIT
Dear Mikhail, Note that Abinit can take advantage of spatial symmetries as well as time-reversal symmetry. Actually this is the default behaviour for k-point sampling (kptopt 1) while kptopt 4 allows one to remove time-reversal symmetry when generating the IBZ. See also m K and K' are connected by T...
- Sun May 13, 2018 12:30 am
- Forum: Configuring and compiling ABINIT
- Topic: Error message in compiling 8.8.1 [SOLVED]
- Replies: 4
- Views: 6878
Re: Error message in compiling 8.8.1 [SOLVED]
I was not able to reproduce the problem with the intel-based configurations we use for the test farm but I think the compilation error is due to the preprocessing done by the compiler. From your error message, it seems that one of the CPP macros used in the code goes beyond the 132 column limit of F...
- Tue May 16, 2017 9:02 am
- Forum: Ground state
- Topic: MKMEM input variable problem
- Replies: 2
- Views: 2274
Re: MKMEM input variable problem
mkmem is now an internal variable, it's not possible to set its value in the input file.
Use paral_kgb = 1 and nkpkpt, npband, npfft to decrease the memory requirements when
the number of MPI processes is greater than the number of k-points in the IBZ
Use paral_kgb = 1 and nkpkpt, npband, npfft to decrease the memory requirements when
the number of MPI processes is greater than the number of k-points in the IBZ
- Tue May 16, 2017 9:00 am
- Forum: Other tools and postprocessing in ABINIT
- Topic: cut3d error when extracting wave functions from _WFK file
- Replies: 6
- Views: 5818
Re: cut3d error when extracting wave functions from _WFK fil
Can you try to set `ulimit -s unlimited` before running cut3d? If the error persists, change cut3d to enforce Fortran-IO (see patch below), recompile with `make` and rerun diff --git a/src/83_cut3d/m_cut3d.F90 b/src/83_cut3d/m_cut3d.F90 index 3004f171..81e67c84 100644 --- a/src/83_cut3d/m_cut3d.F90 ...
- Wed Mar 22, 2017 10:30 pm
- Forum: Other tools and postprocessing in ABINIT
- Topic: Running Python script APPA using locally installed Python2.7 [SOLVED]
- Replies: 3
- Views: 6349
Re: Running Python script APPA using locally installed Pytho [SOLVED]
Hi Vishank, I don't know if someone is trying to port APPA to pyqt5 but you may try to use conda to create an environment with python2.7 and pyqt4. Conda will create its own installation directory so you don't have to downgrade/reinstall the python packages already installed on your system. These ar...
- Sun Feb 26, 2017 9:19 pm
- Forum: Improving ABINIT
- Topic: Test the performance of abinit8 SCF too slow
- Replies: 4
- Views: 5016
Re: Test the performance of abinit8 SCF too slow
A few comments on your test. First of all, your calculation is done with 4 k-points in the IBZ and the default eigenvalue solver (conjugate-gradient). The CG eigensolver is very robust but the parallelism is limited to nkpt * nsppol MPI processors. Note that the code does not stop if you run it with...
- Sun Feb 26, 2017 6:23 pm
- Forum: Improving ABINIT
- Topic: Test the performance of abinit8 SCF too slow
- Replies: 4
- Views: 5016
Re: Test the performance of abinit8 SCF too slow
my system consisting of 26 atoms and 100 bands on 16 thread
- * OpenMP threads or MPI processes?
* Could you post the input file?
* configure options and output of `abinit -b`
- Thu Feb 09, 2017 7:43 pm
- Forum: Ground state
- Topic: SCF cycle deteriorates during relaxation [SOLVED]
- Replies: 4
- Views: 5792
Re: SCF cycle deteriorates during relaxation [SOLVED]
Hi Gabriel, FCFLAGS_OPTIM = -O2 -xHost xHost is a very problematic option, especially on recent intel architectures and code compiled with ifort (the compiler activates vectorization that may not behave in a deterministic way and this causes weird behaviour and/or numerical instabilities e.g. struct...
- Wed Dec 21, 2016 6:56 pm
- Forum: Response calculations
- Topic: Imaginary frequencies and anaddb [SOLVED]
- Replies: 1
- Views: 3043
Re: Imaginary frequencies and anaddb [SOLVED]
In 77_ddb/harmonic_thermo.F90:
Code: Select all
! Sum over the phonon modes
do iii=1,3*natom
! Slightly negative frequencies are put to zero
! Imaginary frequencies are also put to zero
if(phfrq(iii)<0._dp) phfrq(iii)=0._dp
- Mon Dec 19, 2016 10:09 pm
- Forum: Link to other codes
- Topic: SCF convergence problem with one anion in a box
- Replies: 1
- Views: 2529
Re: SCF convergence problem with one anion in a box
I would suggest to look at the eigenvalues to understand what's happening.
If there are degeneracies, you may try to use tsmear and a "metallic occupation scheme.
See: http://www.abinit.org/doc/helpfiles/for ... tml#occopt
If there are degeneracies, you may try to use tsmear and a "metallic occupation scheme.
See: http://www.abinit.org/doc/helpfiles/for ... tml#occopt
- Mon Dec 19, 2016 8:31 pm
- Forum: Ground state
- Topic: PAW band structure with spin orbit coupling
- Replies: 3
- Views: 3144
Re: PAW band structure with spin orbit coupling
if I want to include spin orbit coupling, all I have to do is add pawspnorb 1 to my input file, right? There is no need to use different PAW datasets, or change anything else in the input file? Yes, pawspnorb 1 and nspinor 2 are enough. Unlike NC pseudos, there's no need for specialised PAW dataset...
- Mon Dec 19, 2016 8:07 pm
- Forum: Ground state
- Topic: PAW band structure with spin orbit coupling
- Replies: 3
- Views: 3144
Re: PAW band structure with spin orbit coupling
When I run the input file without pawspnorb 1, the band structure is successfully created, so the problem seems to arise when trying to include spin-orbit coupling. The problem is not related to spin-orbit coupling but to the fact that you are using prtden=3. This option generates the _PAWDEN file ...
- Sat Nov 05, 2016 10:33 am
- Forum: Configuring and compiling ABINIT
- Topic: Trying to test while configuring. But failed every time.
- Replies: 7
- Views: 7775
Re: Trying to test while configuring. But failed every time.
make install should be executed in /home/nissar/Documents/Program/abinit-8.0.8/build/src. You may need to use `sudo make install` if the executables and other files are installed in directories for which you need root privileges (this is the usual case if you haven't specified the installation direc...
- Wed Nov 02, 2016 8:01 pm
- Forum: Response calculations
- Topic: XC: Matching ixc and pspxc [SOLVED]
- Replies: 1
- Views: 4360
Re: XC: Matching ixc and pspxc [SOLVED]
From the documentation:
However, the choices ixc=1, 2, 3 and 7 are fits to the same data, from Ceperley-Alder, and are rather similar, at least for spin-unpolarized systems.
However, the choices ixc=1, 2, 3 and 7 are fits to the same data, from Ceperley-Alder, and are rather similar, at least for spin-unpolarized systems.
- Wed Nov 02, 2016 7:55 pm
- Forum: Configuring and compiling ABINIT
- Topic: Unable to locate package libatlas3gf-base in abinit 8.0.8
- Replies: 1
- Views: 3103
Re: Unable to locate package libatlas3gf-base in abinit 8.0.
This errors is due to your package manager. Try to install atlas instead of libatlas3gf-base See also: m Note that abinit already provides an internal version of blas/lapack so you can compile the code without atlas. Having an optimized blas/lapack makes a huge difference in terms of efficiency if y...
- Wed Nov 02, 2016 9:58 am
- Forum: Configuring and compiling ABINIT
- Topic: Trying to test while configuring. But failed every time.
- Replies: 7
- Views: 7775
Re: Trying to test while configuring. But failed every time.
Though I opened a build directory under abinit-8.0.8 directory and inside the build directory somehow another test directory has been created which do not have runtest.py file Right, the build directory does not contain runtests.py but the script is available in /home/nissar/Documents/Program/abini...