ABINIT Discussion Forums

Dear Gao Zhe, In our test farm, we have a bot with PathScale Compiler ( ekopath 4.0.12 ) and use OpenMPI 1.4.4. with version 6.12.3, all tests ( with all plugins ) pass except test Q4 of MPI-IO my some tests with the nightly version have failed ( even with the paid version < 4.0.12 ) for infos : thi...

Hello

* C compiler : gnu version 4.1
* Fortran compiler: gnu version 4.1

this version is very very very old and never supported

the last supported version is gcc 4.3.x

with this old OS version, it's possible to install gcc 4.4



good luck

jmb

Hi,

not enough infos !

- your configure command and the config.log
- result of command



jmb

Hi, ... it yields a MKDIR_P variable of something... concerning the problem of MKDIR_P, you can try these "solutions" : 1) export MKDIR_P="/bin/mkdir -p" 2) install "coreutils" package with MacPort or fink and change the PATH variable the "/bin/mkdir" of MacOS...

use -P with version 12

jmb

Hi,

If the environment is 64bits, try without "-L$(CUDADIR)/lib"




jmb

Hi,

a little question :

in the /etc/xlf.cfg.[53|61|71]

have you the -P for cppotions ?



jmb

Hi magniff, LIBDIR = -L/usr/lib/atlas-base \ -L/usr/lib \ -L/lib \ -L/home/magniff/Desktop/downloads/magma_1.1.0/lib \ -L/usr/lib/lapack \ -L$(CUDADIR)/lib64 \ -L$(CUDADIR)/lib INC = -I$(CUDADIR)/include \ LIBMAGMA = /home/magniff/Desktop/downloads/magma_1.1.0/lib/magma.a LIBMAGMABLAS = /home/magnif...

Hi, the configuration of our bot ( Power6 / AIX 6.1 / xlf 12.1 ) seems very similar the section mpxlf90_r in our /etc/xlf.cfg.61 file ( or /etc/xlf.cfg.53 ) is exactly the same as your... and we have no problem ( you can see the make output here for the abinit version 6.12.3 : m ) perhaps , the vers...

?

jmb

Hi, I have not yet the opportunity to test the version of mph with Intel Composer XE 2011... but, in the "Intel® Math Kernel Library Link Line Advisor" ( m), you can find all infos needed and among other things, the compilation option to use with fort to activate the mph -mkl=cluster you m...

Hi Temok, Such config.log is attached in this reply. Please note that such log file corresponds for the case ifort 12.1 + openmpi-1.4.5, which I have desisted under your suggestion with this config.log, it's simple to find the problem... ... ./conftest: error while loading shared libraries: libmkl_i...

Hi Temok, 2 things : 1) forget the ifort 12.1 : after analysis of tests results, there are too big errors then it seems that the compiler is not yet ready to use with Abinit use the version 11.1.073 : it works with 6.12.2 , all plugins and openmpi 1.4.3 2) you have a problem with wannier90, then we ...

Hi Vahid,

it's not a problem : it's a test...

see for example, http://lists.gnu.org/archive/html/autoconf/2011-03/msg00009.html

regards

jmb

Hello Temok, for info, I succeed to compile abinit 6.12.2 with ifort 12.1.3.293 and openmpi 1.4.5 under Fedora 16 tests are the config file : 1) for openmpi #!/bin/bash export CPP="icc -E" export CC=icc export CFLAGS="-O2 -vec-report0" export CXX=icpc export CXXFLAGS="-O2 -v...

Hi,

Mukul.pu02 wrote:wget http://archives.abinit.org/plugins/netcdf-4.1.1.tar.gz
The error is as follows:
--17:30:05-- http://archives.abinit.org/plugins/netcdf-4.1.1.tar.gz
Resolving archives.abinit.org... failed: Temporary failure in name resolution.

the link is correct
and, as you see, this a "temporary failure" with DNS...

jmb

Hi Yann, Does the segfault on v6#t48 still happen if you recompile the file without optimizations? if I compile only "32_util/ysF90" with -O0 ( and without the workaround ), the test succeeds ! I try to modify the code inside ys.F90 ( for ex : replace the case construction,... ) without su...

but tests of FoX succeed with the last version of ifort Version 12.1.1.256

jmb

Hi,

you must use, with abinit version 6.12.1,

--with-trio-flavor=netcdf+etsf_io+fox

the compilation works for me with FoX-4.1.2...but not the tests
segfault !

regards

jmb

Hi Miguel,

FoX is currently supported and tested with GCC and XLF compilers...

I can try with fort 10.1, 11.1 and 12.1

what is the version of your compiler ?

regards

jmb

Hi temok, I succeeded in compile with - abinit 6.12.2 - ifort 10.1.008 - atompaw 3.0.1.3 - wannier90 1.2.0.1 - bigdft 1.6 - libxc 1.1.0 this is my ".ac" file for configure : CC="/cvos/shared/apps/intel/cce/10.1.008/bin/icc" CXX="/cvos/shared/apps/intel/cce/10.1.008/bin/icpc&...

Hi temok, we have a testfarm to test nightly abinit ( http://www.abinit.org/developers/abinit-dev-status/nightly-builds/abinit-6.12 ) one of the bots use "ifort 10.1" but unfortunately, the build is without any plugins ! the "fortcom: Severe: **Internal compiler error: internal abort&...

Thanks !

no trace of a fix in the new version 12.2 in http://www.pgroup.com/support/release_tprs_2012.htm

jmb

Hi, my experience with open64 5.0 from open64.org ( better under Xeon / CentOS 6.2 than open64 4.2.5 from AMD !?! ) I use openmpi 1.4.4 and my .ac file for configure of abinit is : enable_mpi="yes" enable_mpi_io="no" with_mpi_prefix="/usr/local/openmpi_open64" enable_64...

Hi abidave, The build system of Abinit has no support for PGI, because their Fortran compiler has too many bugs. If you run into a bug with a PGI compiler, you can send it to trs@pgroup.com or post at m They are pretty good at fixing issues reported from users. PGI is working currently working on su...