ABINIT Discussion Forums

Bahaar another precision concerning mpich2 smpd daemon... 1. stopping MPICH2 process Manager, Argonne National lab. 2. MPICH2 process Manager, Argonna National lab Stopped. 3. MPICH2 process Manager, Argonna National lab removed. if the "bin\snmp -install" had been already started, the ser...

Hello, First of all, I'm just trying the recipe with my PC with a fresh windows 7 installation and the "abinit-6.6.3_i686_cygwin_gnu4.5.zip" package For parallel i have a question. I use the "bin\smpd -install" command as determined in readme. except for the command "bin\smp...

Hello, this is my recipe for a Core-i7 / ubuntu 10.04 (64bits) / abinit 6.8.2 or 6.10.1 ( tested under our testfarm ) : from a fresh install : 1) installation of theses packages : apt-get -y install gcc gfortran apt-get -y install patch apt-get -y install libnetcdf4 libnetcdf-dev apt-get -y install ...

Hello,

roginovicci wrote:No the mpich is 1.2 should I ask to upgrade up to 1.4?

can you try first with the version 1.3.2p1 ?

if you want to use the version 1.4.1p1 , see before the thread :http://forum.abinit.org/viewtopic.php?f=3&t=1206

jmb

Hi,

My question is: is it possible (preferably free or inexpensive) to obtain remote access to supercomputer? If so, where and how?

take a look on : http://www.abinit.org/news/abinit-on-nanohub

jmb

Hi,

I use the v.6.6.3 of abinit installed on windows and use the abinit<ab.files command to run the code. when i use abinit<ab.files&log command, cod runs as well but no log file appears in the output.

and with

Code: Select all

abinit < ab.files >& log

jmb

Hello, the version of mpich2 is 1.4.x ? if yes, perhaps your problem is related of a problem with mpich2 not with abinit then you can read this topic ( http://trac.mcs.anl.gov/projects/mpich2/changeset/8834 ) reproduced here : Index: /mpich2/branches/release/mpich2-1.4.x/RELEASE_NOTES ==============...

Hi Steven, sorry for this long delay of in my reaction... --- src/binding/f90/buildiface 2011-03-20 15:37:51.000000000 -0400 +++ ../../mpich2-1.4/src/binding/f90/buildiface 2011-07-25 19:12:52.529963846 -0400 @@ -189,6 +189,7 @@ 'Op_commutative-2' => 'bool', 'File_set_atomicity-2' => 'bool', 'File_g...

Hello, /tmp/pathcc-s-74b0dc51.s:4669:2: error: ORG overlap with already existing data .org 0x0 ^ I had this error with the "free" version ( nightly build = develpoment ) ( I had introduce a bug report...) I was able to compile the version 6.8 ( and 6.10 ) but with the paid version pathf90 ...

Hello Anna, I suspect a problem of architecture (32bit vs 64bit) can you use this configure command with the 64bit enabled ( and a additionnal lib with netcdf option ( netcdff = netcdf for fortran ) ) : ../abinit-6.6.1_invKS/configure \ --with-fallbacks-tardir=/Users/anna/Documents/anna/1projects/si...

Hello Anna, little problem in your configure command : use "--with-netcdf-incs="-I/opt/local/include" ( with 's' in "incs" ) nothing stange in the env or in the config.log /var/folders/bl/8wb0ry9x00g8k6v3l9z293r80000gp/T//ccutkXba.s:39:no such instruction: `vmovsd 8(%rdi), %...

Hello Anna,

some questions to clear the problem :

which version of abinit ?
which configure command are you using ?

can you send me the config.log ?
can you send me the results of these commands :

Code: Select all

env
gcc --version
gfortran --version

jmb

Hello, I am getting the following error while netCDF is configuring: checking if Fortran "real" is C "float"... configure: error: Could not compile conftest.c we need the 'plugins/netcdf/netcdf-4.1.1/config.log' file to understand the problem another solution : there is a port fo...

Hello, First of all, LAM is no longer tested / supported configure:8041: parsing command-line options configure:9115: Initializing MPI support configure:9119: looking for MPI in /export/mpi/lam/bin/ configure:9152: checking for a MPI C compiler configure:9159: result: none found configure:9166: chec...

Hi, we have a bot to test abinit under ubuntu 10.4 with deb packages ( when availables ) then, the packages availables are : - gcc 4.4.3 - netcdf 4.1 - openmpi 1.4.1 - fftw3 3.2 - atlas 3.6 I download the libxc 1.1.0 from tddtf.org , configure it and install it under /opt/etsf/ the others plugins ( ...

Hi, the explaination : mpich2-1.4's explicitly defines MPI_Type_hvector in fortran90 module as follows: SUBROUTINE MPI_TYPE_HVECTOR(v0,v1,v2,v3,v4,ierror) USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND INTEGER v0, v1 INTEGER(KIND=MPI_ADDRESS_KIND) v2 INTEGER v3, v4 INTEGER ierror END SUBROUTINE MPI_TYPE_HV...

it compiles with 6.9.1, mpich2 1.3.2p1 and gcc 4.6.1

there is something in mpich2 1.4.0...

to follow...

jmb

Hi John,

I just encountered the same problem (not yet understood) with the development version 6.9.1 of abinit, mpich2 1.4.0 and gcc 4.6.1

it still works with version 6.9.1, mpich2 1.3.1 and gcc 4.5.3 !

What versions of mpich2 and gcc are you using ?

regards

jmb

Hi,

it's perhaps a good idea, if OpenMPI support is becoming a priority , to have a bot in the testfarm for testing the OpenMPI

thanks

jmb

Dear bahaar,

Sorry , I forgot to answer the seq question...

what is the output / error ?

regards

jmb

Dear bahaar, as indicated in the README file : * parallel - start as administrator , a "command prompt" to start smpd bin\smpd -install - as "user" cd share\example ..\..\bin\mpiexec -localonly 2 ..\..\bin\abinit < "t_kpt+spin.files" another solution is to install ( as ...

Hello Marco,

As suggested by Alain, it would be preferable to use in build system, the nomenclature "GPU compute capability" rather than accuracy ( SP or DP )
( http://www.geeks3d.com/20100606/gpu-com ... ive-table/ )

my 50 cents,

jmb

Hi Raff, thank Alain ( ) for your answer.... if it's the 64bits version, first of all, thank you for your feedback... have you read the very, very, very little, alpha "README" file ? there is a "Quick Start" section : is it so incomprehensible explanations ? ok , I'm not fluence ...

Matth, Sorry, but I don't understand... where is your gsl/yourfile.h ? you also give the include statements : with_math_incs="-I/gpfs/apps/GSL/1.9/64/include" FLAGS_EXTRA = -I/gpfs/apps/GSL/1.9/64/include I don't understand why the compilation doesn't work... but yes , I agree with you con...

Matth, now, I have a bot ( buda_gcc45_gsl ) and I put in the .ac file with_math_flavor = gsl with_math_incs = -I/usr/local/gsl/include with_math_libs = -L/usr/local/gsl/lib -lgsl CFLAGS_EXTRA = -I/usr/local/gsl/include and ./configure && make && make tests works and the waterfall is ...

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Re: abinit for windows 7

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