Search found 55 matches

by JEJohns
Wed Mar 04, 2015 11:11 pm
Forum: Ground state
Topic: dipole correction
Replies: 3
Views: 5421

Re: dipole correction

Reading through the threads, I had a couple of questions related to this topic. If someone, either developer or no has any thought's I'd love to hear them. My understanding is that VASP & Quantum Espresso include their dipole corrections according to the following two papers J. Neugebauer and M....
by JEJohns
Mon Feb 02, 2015 9:39 pm
Forum: Other tools and postprocessing in ABINIT
Topic: can not use Cut3d
Replies: 4
Views: 5479

Re: can not use Cut3d

Hi Jordan, I see a similar behavior, but it seems to occur only when I'm handling a large file. For example, I'm currently working on a surface with 147 atoms, and an ~18 x 18 x75 bohr hexagonal unit cell. When I try and load the *POT file with cut3d, I get the same error as you jiabo. When I then t...
by JEJohns
Mon Nov 03, 2014 11:51 pm
Forum: Ground state
Topic: dipole correction
Replies: 3
Views: 5421

Re: dipole correction

I know this is an old thread, but I wanted to bring it back up considering the number of people who post about surfaces and 2D materials. Are there any plans to incorporate dipole correction terms for super cells, or would they be particularly easy for someone to implement into the code? Thanks, James
by JEJohns
Mon Feb 24, 2014 10:01 pm
Forum: Link to other codes
Topic: PAW: Density went too small (xc_denpos)
Replies: 2
Views: 4933

Re: PAW: Density went too small (xc_denpos)

Hi Temok, Can you post your input file? I had a similar issue with some PAW calculations with a vacuum region, and found the problem to be not with the actual PAWs, FFT, or ECUT/PAWECUTDG, but with the model dielectric function. When doing NC calculations I would typically use iprcel =45, but for re...
by JEJohns
Mon Feb 24, 2014 9:51 pm
Forum: Ground state
Topic: dispersion correction
Replies: 2
Views: 2542

Re: dispersion correction

Hi Jonas, I totally understand where you're coming from, I've asked on these forums a couple times about things that were in places I wasn't expecting. The Grimme DFT-D2 pair wise dispersion correction is available. It's listed under the the features page (m), and there is a test for it (under ~abin...
by JEJohns
Wed Feb 05, 2014 2:20 am
Forum: Ground state
Topic: Crashing with Paw & iprcel /= 0
Replies: 7
Views: 7020

Re: Crashing with Paw & iprcel /= 0

Hi Everyone, I wanted to make sure that I wasn't just mooching here on the board. I thought that since the output referred to m_distribfft.F90, I thought it could be the way I compiled abinit. So I downloaded the windows binaries, and saw the same thing. Looking into line 219 of m_distribfft.F90, it...
by JEJohns
Fri Jan 31, 2014 2:10 am
Forum: Ground state
Topic: Crashing with Paw & iprcel /= 0
Replies: 7
Views: 7020

Re: Crashing with Paw & iprcel /= 0

I wanted to post the simple input below. If I comment out iprcel, everything works in this case. But when I use a larger vacuum and multiple layers, the SCF cycle won't converge. This seems really odd to me, and again this error (error being used loosely, could be MY error) only happens when I use p...
by JEJohns
Thu Jan 30, 2014 9:06 pm
Forum: Ground state
Topic: Crashing with Paw & iprcel /= 0
Replies: 7
Views: 7020

Crashing with Paw & iprcel /= 0

I've been trying to calculate the electronic structure of a surface, and my input files work great using norm conserving psuedopotentials. But recently I've wanted to look at some things with spin orbit coupling, so I've switched to PAW calculations. Because there is a large vacuum, I've used iprcel...
by JEJohns
Sat May 04, 2013 4:12 pm
Forum: Ground state
Topic: Can mGGA functionals used with ionmov?
Replies: 5
Views: 4298

Re: Can mGGA functionals used with ionmov?

I'm using the release version abinit 7.2.1
by JEJohns
Fri May 03, 2013 5:59 am
Forum: Ground state
Topic: Can mGGA functionals used with ionmov?
Replies: 5
Views: 4298

Re: Can mGGA functionals used with ionmov?

Hi Prof. Zwanzig, It took a long time to get back to this, but I wanted to not just give you a silly answer. I've tried using a standard GGA pseudopotential (HGH PBE) and generating my own with APE and the M06-L functional with the output in the abinit6 format. In the run that I had posted, I had us...
by JEJohns
Tue Apr 16, 2013 9:59 pm
Forum: Ground state
Topic: Can mGGA functionals used with ionmov?
Replies: 5
Views: 4298

Can mGGA functionals used with ionmov?

Hello, Since hybrid functionals can't be used for GS calculations yet, and I'm trying to use some geometry opmtimizations using MetaGGA's in abinit. I'm starting with the lattice constants of graphite to work out problems with my input files. When I do, I find that the program crashes during the ini...
by JEJohns
Tue Apr 16, 2013 4:28 pm
Forum: Ground state
Topic: Hybrid functionals
Replies: 11
Views: 9907

Re: Hybrid functionals

Hi Joseph, I Feel really stupid for this post now about the hybrids. The features web page is pretty clear about the hybrids "1. Available physical properties 1.A. Computation of the total energy of an assembly of nuclei and electrons placed in a repeated cell. 1.A.1. The computation can be don...
by JEJohns
Fri Apr 12, 2013 8:21 pm
Forum: Configuring and compiling ABINIT
Topic: Abinit 7.2.1 GCC 4.6.3 openmpi [SOLVED]
Replies: 10
Views: 9196

Re: Abinit 7.2.1 GCC 4.6.3 openmpi [SOLVED]

I thought I'd post this as solved. In the past, on our HPC, using the --with-mpi-prefix option hadn't worked (as recently as 7.0), and I had to specify the compilers as FC=mpif90 etc. Secondly, I still couldn't get the FFT=FFTW3 to make (error in 98 main) using gcc, but using the intel comilers and ...
by JEJohns
Fri Apr 12, 2013 6:40 pm
Forum: Ground state
Topic: Hybrid functionals
Replies: 11
Views: 9907

Re: Hybrid functionals

Hi Joe and Mauro, I'm also very interested in this topic. In particular, it'd be great to be able to optimize structures using the hybrid functionals. I don't know if this helps, Mauro, but the program also crashes if you try HSE06 (ixc=-428). Oddly, this doesn't happen for all hybrids (MN12-SX and ...
by JEJohns
Sun Apr 07, 2013 2:00 am
Forum: Ground state
Topic: Availability of vdW-DF1/2 functionals
Replies: 10
Views: 8175

Re: Availability of vdW-DF1/2 functionals

I wanted to bump this up a bit, and ask in the friendliest of manners (since I'm neither developing nor paying for the code, being polite is the only thing I've got) if moving the vdW-DF1/2 functionals into the debugging stage with the new release means that they can be used, but need testing agains...
by JEJohns
Fri Apr 05, 2013 3:48 am
Forum: Configuring and compiling ABINIT
Topic: Abinit 7.2.1 GCC 4.6.3 openmpi [SOLVED]
Replies: 10
Views: 9196

Abinit 7.2.1 GCC 4.6.3 openmpi [SOLVED]

Hi Everyone, I'm having an issue updating to the newest version of abinit. My HPC system upgraded their software, and I so I had to recompile anyways. I'm getting the following error during MAKE: ../../../abinit-7.2.1/src/66_paw/m_paw_dmft.F90:587.132: ft%mbandc,nspinor,dtset%natom,(2*paw_dmft%maxlp...
by JEJohns
Mon Mar 12, 2012 5:15 pm
Forum: Many-body perturbation theory
Topic: Substrate Effects for BSE style calculations
Replies: 0
Views: 2071

Substrate Effects for BSE style calculations

Hi, I was wondering if it was possible to artificially change the real part of the dielectric constant in a BSE style calculation. For example, I'd like to look at the effect of the effect of a background dielectric on the absorption spectrum of a carbon nanotube encased in a high-k dielectric shell...
by JEJohns
Wed Jan 26, 2011 12:29 am
Forum: Many-body perturbation theory
Topic: listkk : Bug
Replies: 0
Views: 2089

listkk : Bug

I've completed self consistent GW calculations on the material I'm working on, and then I went to go back to create MLWF's using the WFK, KSS, & QPS files. When I did, I got the following error listkk : Bug - The minimum square of dk has negative norm: dksqmn= -1.000000000E0 Action : Contact abi...
by JEJohns
Wed Jan 12, 2011 4:47 pm
Forum: Many-body perturbation theory
Topic: Screening vs. Susceptibility
Replies: 0
Views: 2187

Screening vs. Susceptibility

I have a question about calculating the self energy with either the screening (getscr) or the susceptibility (getsuscep). It seems like these two should be contain the same information, and that doing a sigma calculation with either should be identical. However, in the test files, test t83.in, does ...
by JEJohns
Wed Dec 22, 2010 3:20 pm
Forum: Many-body perturbation theory
Topic: Susceptibility files
Replies: 0
Views: 2200

Susceptibility files

Dear Community, Is there a way to turn off printing the susceptibility (SUS) file during a gwcalctyp 22 calculation? It seems like to do the recursion, you only need to update or carry over the SCR & QPS files. The SUS files seems like they are just taking up space, and in my calculation, it's t...
by JEJohns
Sat Nov 13, 2010 3:46 pm
Forum: Many-body perturbation theory
Topic: Resource Management during Screening
Replies: 5
Views: 5578

Re: Resource Management during Screening

Thanks so much Matteo. I don't think I would have ever figured that out without your help & clarification.
by JEJohns
Fri Nov 12, 2010 6:04 pm
Forum: Many-body perturbation theory
Topic: Resource Management during Screening
Replies: 5
Views: 5578

Re: Resource Management during Screening

Ok, so I ran the same input file, but with inclvkb=2 as you suggested. This used way less memory per node. Below is a graph of the memory usage. I read the documentation for inclvkb, but only 0 & 1 have any documentation, inclvkb=2 is mentioned, but I have no idea from the input variable help ho...
by JEJohns
Thu Nov 11, 2010 6:14 pm
Forum: Many-body perturbation theory
Topic: Resource Management during Screening
Replies: 5
Views: 5578

Re: Resource Management during Screening

I'll do that asap. Unfortunately, all nodes are down & reserved for maintenance, so I'll do it as soon as they come back up and the queue clears (Probably thurs or friday).
by JEJohns
Thu Nov 11, 2010 4:43 am
Forum: Ground state
Topic: supercells and how abinit does them
Replies: 3
Views: 4135

Re: supercells and how abinit does them

I want to make my nanotube infinite in length, but it is unclear how this is done in the context of a supercell. any input would be much appreciated. Joe, I think I can help clarify. Abinit does planewave based DFT, using periodic boundary conditions. This means that even if you do a calculation at...
by JEJohns
Thu Nov 11, 2010 1:50 am
Forum: Many-body perturbation theory
Topic: Resource Management during Screening
Replies: 5
Views: 5578

Resource Management during Screening

I'm trying to do a Convergence on the energy cutoff for wavefunctions during a screening calculation. I've attached a successful input file below. My question is about the memory usage of Abinit during a screening calculation. I'm running these calculations on the Quest machine at Northwestern, whic...