Search found 9 matches

by JimEvans
Sat Mar 02, 2019 10:56 pm
Forum: Configuring and compiling ABINIT
Topic: Segmentation fault on plane wave computations
Replies: 5
Views: 3611

Re: Segmentation fault on plane wave computations

Hi Eric,

I am on a 64 bit x86 laptop running Ubintu 18.10. Abinit was compiled with gcc/gfortran 8.2. I ran the fast tests with "make test" after compiling but not the full runtest.py yet.

Cheers,

Jim
by JimEvans
Wed Feb 27, 2019 12:40 am
Forum: Configuring and compiling ABINIT
Topic: Segmentation fault on plane wave computations
Replies: 5
Views: 3611

Re: Segmentation fault on plane wave computations

Dear Eric, My apologies, input, output and configuration details are attached. This is the standard PAW tutorial file that comes with Abinit, so it should run fine. I've tried some of the other PAW-related files and different PSPs, and it gives the same error. Many thanks, Jim abinit.log tpaw1_1.in ...
by JimEvans
Tue Feb 26, 2019 6:40 am
Forum: Configuring and compiling ABINIT
Topic: Segmentation fault on plane wave computations
Replies: 5
Views: 3611

Segmentation fault on plane wave computations

Hello, I am getting segmentation faults on PAW calculations just after the SCF converges. Here is the message that comes up on running the first PAW tutorial: Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: #0 0x7fa84194491a in ??? #1 0x7fa84...
by JimEvans
Mon Feb 18, 2019 9:56 pm
Forum: Configuring and compiling ABINIT
Topic: Configuration problems with Abinit 8.10.2 [SOLVED]
Replies: 9
Views: 7792

Re: Configuration problems with Abinit 8.10.2 [SOLVED]

My problem with libxc WAS that I was using 4.3.0 instead of 4.2.*. I am still not having any luck with bigDFT and wannier90, but I don't think I need those yet. If I do, I will be back :D

Thanks for your help!
by JimEvans
Sun Feb 17, 2019 2:24 am
Forum: Configuring and compiling ABINIT
Topic: Configuration problems with Abinit 8.10.2 [SOLVED]
Replies: 9
Views: 7792

Re: Configuration problems with Abinit 8.10.2 [SOLVED]

This seems to do the trick with netcdf. So I spent the last week recompiling the libxc, bigdft, etc libraries and making sure everything was in /usr/local. However the configure script is still choking on libxc. checking whether to select a fallback for libxc... no checking xc.h usability... yes che...
by JimEvans
Thu Feb 07, 2019 1:16 am
Forum: Configuring and compiling ABINIT
Topic: Configuration problems with Abinit 8.10.2 [SOLVED]
Replies: 9
Views: 7792

Re: Configuration problems with Abinit 8.10.2 [SOLVED]

Thank you very much! Here are the config log and output.
out.log
Output
(18.16 KiB) Downloaded 302 times

config.log
Config.log
(119.83 KiB) Downloaded 321 times
by JimEvans
Wed Feb 06, 2019 1:39 am
Forum: Configuring and compiling ABINIT
Topic: Configuration problems with Abinit 8.10.2 [SOLVED]
Replies: 9
Views: 7792

Re: Configuration problems with Abinit 8.10.2 [SOLVED]

Hi, Here is /usr/lib/netcdf: drwxr-xr-x 6 root root 4096 Jan 31 17:23 . drwxr-xr-x 110 root root 4096 Jan 31 17:13 .. drwxr-xr-x 2 root root 4096 Jan 31 17:39 bin drwxr-xr-x 2 root root 4096 Jan 31 17:39 include drwxr-xr-x 3 root root 4096 Jan 31 17:39 lib drwxr-xr-x 5 root root 4096 Jan 31 17:23 sh...
by JimEvans
Tue Feb 05, 2019 8:53 pm
Forum: Configuring and compiling ABINIT
Topic: Configuration problems with Abinit 8.10.2 [SOLVED]
Replies: 9
Views: 7792

Re: Configuration problems with Abinit 8.10.2 [SOLVED]

Hi, I have gfortran 8.2, and I am trying to install in serial. The output of "dpkg -l | grep netcdf" is: ii libnetcdf-dev 1:4.6.1-3 amd64 creation, access, and sharing of scientific data ii libnetcdf13:amd64 1:4.6.1-3 amd64 Interface for scientific data access to large binary data The outp...
by JimEvans
Sun Feb 03, 2019 3:14 am
Forum: Configuring and compiling ABINIT
Topic: Configuration problems with Abinit 8.10.2 [SOLVED]
Replies: 9
Views: 7792

Configuration problems with Abinit 8.10.2 [SOLVED]

Hello everyone, I'm having problems with the configuration step that I cannot work out. Here is my .ac file: prefix="/usr/local" with_trio_flavor="netcdf" with_netcdf_incs="-I/usr/lib/netcdf/include" with_netcdf_libs="-L/usr/lib/netcdf/lib -lnetcdff -lnetcdf" ...