Search found 13 matches

by marsusi
Thu Jan 05, 2017 10:46 am
Forum: Ground state
Topic: HYbrid functional
Replies: 0
Views: 1734

HYbrid functional

opt.in Dear all, I have used HSEPBE functional, as you can see in attached file for looking for magnetization of fluorinated graphene. But the results are exactly what I have obtained from pure PBE. This not what expected from HSE functional, as what is presented in literatures. The magnetization o...
by marsusi
Fri Sep 09, 2016 11:11 am
Forum: Response calculations
Topic: phonon eigenvector [SOLVED]
Replies: 2
Views: 5471

Re: phonon eigenvector [SOLVED]

Dear Jordan,

Many thanks for your help. I got the eigen vectors.

Farah.
by marsusi
Fri Sep 09, 2016 7:57 am
Forum: Response calculations
Topic: phonon eigenvector [SOLVED]
Replies: 2
Views: 5471

phonon eigenvector [SOLVED]

Hello every one, I have put outscphon into 1 in order to get PHVEC file and can visualize atomic displacement in each mode. But this flag is not working for eigen vectors and no PHVEC file is generated by ABINIT-8.0.6. Also, is any other way to visualize phonons in each mode? Any help would be very ...
by marsusi
Mon Jun 13, 2016 8:40 am
Forum: Ground state
Topic: individual contribution to band structure
Replies: 1
Views: 4221

individual contribution to band structure

Dear all, Is there any flag in ABINIT input variables to separate the individual contributions of two matters interacting in a supercell, like as graphene sheet and an organic monomer, into total band structure? If so, one can detect the change in the band structure and optical gap of each structure...
by marsusi
Thu May 26, 2016 10:28 pm
Forum: Configuring and compiling ABINIT
Topic: configure libxc
Replies: 3
Views: 3910

Re: configure libxc

So, it does not work with abinit.
by marsusi
Thu May 26, 2016 10:26 pm
Forum: Configuring and compiling ABINIT
Topic: configure libxc
Replies: 3
Views: 3910

Re: configure libxc

Yes, and received no error message. But, I received:
=== Connectors / Fallbacks ===
Connectors on : yes
Fallbacks on : yes
DFT flavor : none
FFT flavor : fftw3
LINALG flavor : netlib-fallback
MATH flavor : none
TIMER flavor : abinit
TRIO flavor : none
in a test log!
by marsusi
Thu May 26, 2016 10:29 am
Forum: Configuring and compiling ABINIT
Topic: configure libxc
Replies: 3
Views: 3910

configure libxc

Hello all, I need vdw functional and must compile abinit with libxc. However, when configure libxc-3.0.0 in my HOME/local directory, I recive this error message: ./configure --prefix="$HOME/local" and the messege is: ./configure: line 38: sort: No such file or directory ./configure: line 3...
by marsusi
Mon Jan 20, 2014 9:07 pm
Forum: Ground state
Topic: thread in abinit 7.4.3
Replies: 0
Views: 1486

thread in abinit 7.4.3

Dear all, RS calculations on a cluster grid stops after checking for DATASETS for naphthalene monoclinic crystal, while the same RS calculations on this node is runing without problems for a FCC or BCC structure. Older abinit version was tested for this input file on a multiprocessors computer, and ...
by marsusi
Mon Jan 20, 2014 5:58 pm
Forum: Configuring and compiling ABINIT
Topic: parallelization on cluster
Replies: 3
Views: 2893

Re: parallelization on cluster

Dear Yann, Unfortunately I have no access to config.log file as a user of the cluster, but I believe it may be an abinit 7.4.3 bug. My crystal has monoclinic structure, and I got the error as you can see it in log files, or the job stops after checking the DATASETS. I have run other examples, but wi...
by marsusi
Wed Jan 01, 2014 11:07 am
Forum: Configuring and compiling ABINIT
Topic: parallelization on cluster
Replies: 3
Views: 2893

parallelization on cluster

Hello all, My spin-unpolarized input file includes 32 jdtset, 64 nkpt, 53 nband. When put to execute on a cluster using 32 cores, stops without any error in the first stage of running after checking input parameters. This is the last line of log file: chkinp: Checking input parameters for consistenc...
by marsusi
Thu Aug 01, 2013 11:29 am
Forum: Response calculations
Topic: including van der waals interaction into DFPT
Replies: 0
Views: 1690

including van der waals interaction into DFPT

Dear users,

Can DFPT sources of abinit also calculate the effect of vdw interactions on phonon frequencies? Can one use for example ixc=-170 to compute electron-phonon interaction correctly and calculate the vdw effect on the the related matrix components?

Sincerely yours,

Marsusi.
by marsusi
Sun Jul 21, 2013 8:32 am
Forum: Ground state
Topic: number of atoms in .cif file
Replies: 2
Views: 2704

Re: number of atoms in .cif file

Dear Boris,

Thanks a lot.

Marsusi,
Amirkabir university, Tehran.
by marsusi
Sat Jul 13, 2013 10:06 am
Forum: Ground state
Topic: number of atoms in .cif file
Replies: 2
Views: 2704

number of atoms in .cif file

Dear abinit users, I am trying to build a monoclinic cell of naphthalene, C10H8. From the international tables, this belongs to space group #4, with two melecules per cell results in 36 atoms. What is strange is the abinit-made cif file. The number of atoms in this file has been printed 36 instead o...