This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ABINIT configure 8.10.2, which was generated by GNU Autoconf 2.69. Invocation command line was $ ../configure --with-config-file=./jim.ac ## --------- ## ## Platform. ## ## --------- ## hostname = jimbuntu uname -m = x86_64 uname -r = 4.18.0-13-generic uname -s = Linux uname -v = #14-Ubuntu SMP Wed Dec 5 09:04:24 UTC 2018 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games PATH: /usr/local/games PATH: /snap/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3677: checking build system type configure:3691: result: x86_64-unknown-linux-gnu configure:3711: checking host system type configure:3724: result: x86_64-unknown-linux-gnu configure:3744: checking target system type configure:3757: result: x86_64-unknown-linux-gnu configure:3801: checking for a BSD-compatible install configure:3869: result: /usr/bin/install -c configure:3880: checking whether build environment is sane configure:3935: result: yes configure:4086: checking for a thread-safe mkdir -p configure:4125: result: /bin/mkdir -p configure:4132: checking for gawk configure:4162: result: no configure:4132: checking for mawk configure:4148: found /usr/bin/mawk configure:4159: result: mawk configure:4170: checking whether make sets $(MAKE) configure:4192: result: yes configure:4221: checking whether make supports nested variables configure:4238: result: yes configure:4327: checking whether UID '1000' is supported by ustar format configure:4330: result: yes configure:4337: checking whether GID '1001' is supported by ustar format configure:4340: result: yes configure:4348: checking how to create a ustar tar archive configure:4359: tar --version tar (GNU tar) 1.30 Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later . This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by John Gilmore and Jay Fenlason. configure:4362: $? = 0 configure:4402: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:4405: $? = 0 configure:4409: tar -xf - all OK configure:8280: configure:8289: checking consistency of experimental options configure:8304: |---> all OK configure:8307: configure:8316: checking consistency of maintainer options configure:8329: |---> all OK configure:8332: configure:8341: parsing command-line options configure:9517: Initializing MPI support configure:9724: compiler checks deferred configure:10022: GPU support disabled from command-line configure:10065: checking for sh configure:10083: found /bin/sh configure:10096: result: /bin/sh configure:10106: checking for mv configure:10124: found /bin/mv configure:10137: result: /bin/mv configure:10147: checking for perl configure:10165: found /usr/bin/perl configure:10178: result: /usr/bin/perl configure:10188: checking for rm configure:10206: found /bin/rm configure:10219: result: /bin/rm configure:10232: checking for patch configure:10248: found /usr/bin/patch configure:10259: result: patch configure:10274: checking for tar configure:10290: found /bin/tar configure:10301: result: tar configure:10667: checking for gcc configure:10683: found /usr/bin/gcc configure:10694: result: gcc configure:10923: checking for C compiler version configure:10932: gcc --version >&5 gcc (Ubuntu 8.2.0-7ubuntu1) 8.2.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:10943: $? = 0 configure:10932: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 8.2.0-7ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-8 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 8.2.0 (Ubuntu 8.2.0-7ubuntu1) configure:10943: $? = 0 configure:10932: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:10943: $? = 1 configure:10932: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:10943: $? = 1 configure:10963: checking whether the C compiler works configure:10985: gcc conftest.c >&5 configure:10989: $? = 0 configure:11037: result: yes configure:11040: checking for C compiler default output file name configure:11042: result: a.out configure:11048: checking for suffix of executables configure:11055: gcc -o conftest conftest.c >&5 configure:11059: $? = 0 configure:11081: result: configure:11103: checking whether we are cross compiling configure:11111: gcc -o conftest conftest.c >&5 configure:11115: $? = 0 configure:11122: ./conftest configure:11126: $? = 0 configure:11141: result: no configure:11146: checking for suffix of object files configure:11168: gcc -c conftest.c >&5 configure:11172: $? = 0 configure:11193: result: o configure:11197: checking whether we are using the GNU C compiler configure:11216: gcc -c conftest.c >&5 configure:11216: $? = 0 configure:11225: result: yes configure:11234: checking whether gcc accepts -g configure:11254: gcc -c -g conftest.c >&5 configure:11254: $? = 0 configure:11295: result: yes configure:11312: checking for gcc option to accept ISO C89 configure:11375: gcc -c -g -O2 conftest.c >&5 configure:11375: $? = 0 configure:11388: result: none needed configure:11419: checking for style of include used by make configure:11447: result: GNU configure:11473: checking dependency style of gcc configure:11584: result: gcc3 configure:11656: checking how to run the C preprocessor configure:11687: gcc -E conftest.c configure:11687: $? = 0 configure:11701: gcc -E conftest.c conftest.c:18:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11701: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | /* end confdefs.h. */ | #include configure:11726: result: gcc -E configure:11746: gcc -E conftest.c configure:11746: $? = 0 configure:11760: gcc -E conftest.c conftest.c:18:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11760: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | /* end confdefs.h. */ | #include configure:11800: checking which type of compiler we have configure:12017: result: gnu 8.2 configure:12032: checking for ANSI C header files configure:12052: gcc -c conftest.c >&5 configure:12052: $? = 0 configure:12125: gcc -o conftest conftest.c >&5 configure:12125: $? = 0 configure:12125: ./conftest configure:12125: $? = 0 configure:12136: result: yes configure:12149: checking for sys/types.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for sys/stat.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for stdlib.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for string.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for memory.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for strings.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for inttypes.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for stdint.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12149: checking for unistd.h configure:12149: gcc -c conftest.c >&5 configure:12149: $? = 0 configure:12149: result: yes configure:12161: checking whether byte ordering is bigendian configure:12176: gcc -c conftest.c >&5 conftest.c:30:9: error: unknown type name 'not' not a universal capable compiler ^~~ conftest.c:30:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal' not a universal capable compiler ^~~~~~~~~ conftest.c:30:15: error: unknown type name 'universal' configure:12176: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:12221: gcc -c conftest.c >&5 configure:12221: $? = 0 configure:12239: gcc -c conftest.c >&5 conftest.c: In function 'main': conftest.c:36:4: error: unknown type name 'not'; did you mean 'ino_t'? not big endian ^~~ ino_t conftest.c:36:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^~~~~~ configure:12239: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:12367: result: no configure:12386: checking whether to enable assertions configure:12404: result: yes configure:12412: checking malloc.h usability configure:12412: gcc -c conftest.c >&5 configure:12412: $? = 0 configure:12412: result: yes configure:12412: checking malloc.h presence configure:12412: gcc -E conftest.c configure:12412: $? = 0 configure:12412: result: yes configure:12412: checking for malloc.h configure:12412: result: yes configure:12805: checking for g++ configure:12821: found /usr/bin/g++ configure:12832: result: g++ configure:12859: checking for C++ compiler version configure:12868: g++ --version >&5 g++ (Ubuntu 8.2.0-7ubuntu1) 8.2.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12879: $? = 0 configure:12868: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 8.2.0-7ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-8 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 8.2.0 (Ubuntu 8.2.0-7ubuntu1) configure:12879: $? = 0 configure:12868: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:12879: $? = 1 configure:12868: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:12879: $? = 1 configure:12883: checking whether we are using the GNU C++ compiler configure:12902: g++ -c conftest.cpp >&5 configure:12902: $? = 0 configure:12911: result: yes configure:12920: checking whether g++ accepts -g configure:12940: g++ -c -g conftest.cpp >&5 configure:12940: $? = 0 configure:12981: result: yes configure:13006: checking dependency style of g++ configure:13117: result: gcc3 configure:13146: checking which type of C++ compiler we have configure:13363: result: gnu 8.2 configure:13734: checking for gfortran configure:13750: found /usr/bin/gfortran configure:13761: result: gfortran configure:13787: checking for Fortran compiler version configure:13796: gfortran --version >&5 GNU Fortran (Ubuntu 8.2.0-7ubuntu1) 8.2.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13807: $? = 0 configure:13796: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 8.2.0-7ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-8 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 8.2.0 (Ubuntu 8.2.0-7ubuntu1) configure:13807: $? = 0 configure:13796: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:13807: $? = 1 configure:13796: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:13807: $? = 1 configure:13816: checking whether we are using the GNU Fortran compiler configure:13829: gfortran -c conftest.F >&5 configure:13829: $? = 0 configure:13838: result: yes configure:13844: checking whether gfortran accepts -g configure:13855: gfortran -c -g conftest.f >&5 configure:13855: $? = 0 configure:13863: result: yes configure:13960: checking which type of Fortran compiler we have configure:14319: result: gnu 8.2 configure:14332: checking fortran 90 modules extension configure:14359: gfortran -c -g -O2 conftest.f >&5 configure:14359: $? = 0 configure:14382: result: mod configure:14396: checking for Fortran flag to compile .F90 files configure:14416: gfortran -c -g -O2 conftest.F90 >&5 configure:14416: $? = 0 configure:14425: result: none configure:14461: determining Fortran module case configure:14475: gfortran -c -g -O2 conftest.F90 >&5 configure:14475: $? = 0 configure:14499: checking whether Fortran modules are upper-case configure:14501: result: no configure:14518: checking how to get verbose linking output from gfortran configure:14528: gfortran -c conftest.F90 >&5 configure:14528: $? = 0 configure:14546: gfortran -o conftest -v conftest.F90 Using built-in specs. Target: x86_64-linux-gnu Thread model: posix gcc version 8.2.0 (Ubuntu 8.2.0-7ubuntu1) /usr/lib/gcc/x86_64-linux-gnu/8/f951 conftest.F90 -cpp=/tmp/cc8LJRL5.f90 -quiet -v -imultiarch x86_64-linux-gnu conftest.F90 -quiet -dumpbase conftest.F90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/8/finclude -o /tmp/ccgtfLZl.s GNU Fortran (Ubuntu 8.2.0-7ubuntu1) version 8.2.0 (x86_64-linux-gnu) compiled by GNU C version 8.2.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.20-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/8/../../../../x86_64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: /usr/lib/gcc/x86_64-linux-gnu/8/finclude /usr/lib/gcc/x86_64-linux-gnu/8/include /usr/local/include /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed /usr/include/x86_64-linux-gnu /usr/include End of search list. GNU Fortran2008 (Ubuntu 8.2.0-7ubuntu1) version 8.2.0 (x86_64-linux-gnu) compiled by GNU C version 8.2.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.20-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -v --64 -o /tmp/cc4zhmhC.o /tmp/ccgtfLZl.s GNU assembler version 2.31.1 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.31.1 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.spec rename spec lib to liborig /usr/lib/gcc/x86_64-linux-gnu/8/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/8/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper -plugin-opt=-fresolution=/tmp/ccgvzDAS.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. /tmp/cc4zhmhC.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o configure:14629: result: -v configure:14631: checking for Fortran libraries of gfortran configure:14654: gfortran -o conftest -v conftest.F90 Using built-in specs. Target: x86_64-linux-gnu Thread model: posix gcc version 8.2.0 (Ubuntu 8.2.0-7ubuntu1) /usr/lib/gcc/x86_64-linux-gnu/8/f951 conftest.F90 -cpp=/tmp/ccR5W5Rc.f90 -quiet -v -imultiarch x86_64-linux-gnu conftest.F90 -quiet -dumpbase conftest.F90 -mtune=generic -march=x86-64 -auxbase conftest -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/8/finclude -o /tmp/cc4SU8lt.s GNU Fortran (Ubuntu 8.2.0-7ubuntu1) version 8.2.0 (x86_64-linux-gnu) compiled by GNU C version 8.2.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.20-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/8/../../../../x86_64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: /usr/lib/gcc/x86_64-linux-gnu/8/finclude /usr/lib/gcc/x86_64-linux-gnu/8/include /usr/local/include /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed /usr/include/x86_64-linux-gnu /usr/include End of search list. GNU Fortran2008 (Ubuntu 8.2.0-7ubuntu1) version 8.2.0 (x86_64-linux-gnu) compiled by GNU C version 8.2.0, GMP version 6.1.2, MPFR version 4.0.1, MPC version 1.1.0, isl version isl-0.20-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -v --64 -o /tmp/ccXyHATJ.o /tmp/cc4SU8lt.s GNU assembler version 2.31.1 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.31.1 Reading specs from /usr/lib/gcc/x86_64-linux-gnu/8/libgfortran.spec rename spec lib to liborig /usr/lib/gcc/x86_64-linux-gnu/8/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/8/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper -plugin-opt=-fresolution=/tmp/cccI53s0.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o conftest /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. /tmp/ccXyHATJ.o -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o configure:14850: result: -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath configure:14866: checking for dummy main to link with Fortran libraries configure:14900: gcc -o conftest conftest.c -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 configure:14900: $? = 0 configure:14945: result: none configure:14978: checking for Fortran name-mangling scheme configure:14991: gfortran -c conftest.F90 >&5 configure:14991: $? = 0 configure:15032: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/cccLYTbL.o: in function `main': conftest.c:(.text+0xa): undefined reference to `foobar' collect2: error: ld returned 1 exit status configure:15032: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:15032: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 configure:15032: $? = 0 configure:15090: gcc -o conftest conftest.c cfortran_test.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 configure:15090: $? = 0 configure:15132: result: lower case, underscore, no extra underscore configure:15238: checking for python configure:15254: found /usr/bin/python configure:15265: result: python configure:15278: checking for Python CPPFLAGS configure:15293: result: -I/usr/include/python2.7 configure:15302: checking for bzr configure:15332: result: no configure:15347: checking Python.h usability configure:15347: gcc -c -I/usr/include/python2.7 conftest.c >&5 configure:15347: $? = 0 configure:15347: result: yes configure:15347: checking Python.h presence configure:15347: gcc -E -I/usr/include/python2.7 conftest.c configure:15347: $? = 0 configure:15347: result: yes configure:15347: checking for Python.h configure:15347: result: yes configure:15359: checking for numpy/arrayobject.h configure:15391: gcc -c -I/usr/include/python2.7 conftest.c >&5 conftest.c:37:10: fatal error: numpy/arrayobject.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:15391: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | | #include | #include | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | | | | ; | return 0; | } configure:15408: result: no configure:15413: adding "-I/usr/include/numpy" to CPPFLAGS configure:15420: checking for numpy/arrayobject.h configure:15452: gcc -c -I/usr/include/python2.7 -I/usr/include/numpy conftest.c >&5 conftest.c:37:10: fatal error: numpy/arrayobject.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:15452: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | | #include | #include | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | | | | ; | return 0; | } configure:15469: result: no configure:15774: checking for ar configure:15790: found /usr/bin/ar configure:15801: result: ar configure:15862: checking for ranlib configure:15878: found /usr/bin/ranlib configure:15889: result: ranlib configure:15959: checking for cpp configure:15975: found /usr/bin/cpp configure:15986: result: cpp configure:16045: checking for a true C preprocessor configure:16051: result: cpp configure:16098: checking which cpp hints to apply configure:16127: result: default/default/default configure:16136: checking which cc hints to apply configure:16191: result: gnu/default/default configure:16202: checking which xpp hints to apply configure:16206: result: none/none/none configure:16215: checking which cxx hints to apply configure:16262: result: gnu/default/default configure:16273: checking which fpp hints to apply configure:16291: result: default/default/default configure:16300: checking which fc hints to apply configure:16558: result: gnu/default/default configure:16569: checking which ar hints to apply configure:16587: result: none/none/none configure:16605: checking which Fortran preprocessor to use configure:16607: result: configure:16609: checking which Fortran preprocessor flags to apply configure:16611: result: configure:16629: checking whether to wrap Fortran compiler calls configure:16631: result: no configure:16673: checking debugging status configure:16696: result: enabled (profile mode: basic) configure:16717: setting C debug flags to '-g' configure:16725: setting C++ debug flags to '-g' configure:16733: setting Fortran debug flags to '-g' configure:16739: checking whether to activate debug mode in source files configure:16751: result: no configure:16754: checking whether to activate debug verbosity in source files configure:16764: result: no configure:16776: checking which cc debug flags to apply configure:16837: result: gnu/default/default configure:16851: checking which cxx debug flags to apply configure:16855: result: none/none/none configure:16869: checking which fc debug flags to apply configure:17124: result: gnu/default/default configure:17144: checking whether to activate design-by-contract debugging configure:17153: result: no configure:17198: checking optimization status configure:17221: result: enabled (profile mode: standard) configure:17246: checking which cc optimizations to apply configure:17461: result: gnu/default/default configure:17475: checking which cxx optimizations to apply configure:17633: result: gnu/default/default configure:17647: checking which fc optimizations to apply configure:18257: result: gnu/default/default configure:18275: checking whether to apply per-directory optimizations configure:18281: result: yes configure:18851: optimization for 43_ptgroups is -O0 configure:19890: checking for a 64-bit architecture configure:19892: result: yes configure:19894: checking whether to use 64-bit flags configure:19896: result: no configure:19898: checking for user-defined 64-bit flags configure:19900: result: configure:20098: static builds may be performed configure:20145: checking stddef.h usability configure:20145: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20145: $? = 0 configure:20145: result: yes configure:20145: checking stddef.h presence configure:20145: gcc -E conftest.c configure:20145: $? = 0 configure:20145: result: yes configure:20145: checking for stddef.h configure:20145: result: yes configure:20145: checking stdarg.h usability configure:20145: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20145: $? = 0 configure:20145: result: yes configure:20145: checking stdarg.h presence configure:20145: gcc -E conftest.c configure:20145: $? = 0 configure:20145: result: yes configure:20145: checking for stdarg.h configure:20145: result: yes configure:20158: checking stdio.h usability configure:20158: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20158: $? = 0 configure:20158: result: yes configure:20158: checking stdio.h presence configure:20158: gcc -E conftest.c configure:20158: $? = 0 configure:20158: result: yes configure:20158: checking for stdio.h configure:20158: result: yes configure:20158: checking math.h usability configure:20158: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20158: $? = 0 configure:20158: result: yes configure:20158: checking math.h presence configure:20158: gcc -E conftest.c configure:20158: $? = 0 configure:20158: result: yes configure:20158: checking for math.h configure:20158: result: yes configure:20158: checking termios.h usability configure:20158: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20158: $? = 0 configure:20158: result: yes configure:20158: checking termios.h presence configure:20158: gcc -E conftest.c configure:20158: $? = 0 configure:20158: result: yes configure:20158: checking for termios.h configure:20158: result: yes configure:20170: checking errno.h usability configure:20170: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20170: $? = 0 configure:20170: result: yes configure:20170: checking errno.h presence configure:20170: gcc -E conftest.c configure:20170: $? = 0 configure:20170: result: yes configure:20170: checking for errno.h configure:20170: result: yes configure:20183: checking for malloc.h configure:20183: result: yes configure:20183: checking sys/malloc.h usability configure:20183: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 conftest.c:76:10: fatal error: sys/malloc.h: No such file or directory #include ^~~~~~~~~~~~~~ compilation terminated. configure:20183: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define ABINIT_TARGET "x86_64_linux_gnu8.2" | #define HAVE_STDDEF_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_MATH_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:20183: result: no configure:20183: checking sys/malloc.h presence configure:20183: gcc -E conftest.c conftest.c:43:10: fatal error: sys/malloc.h: No such file or directory #include ^~~~~~~~~~~~~~ compilation terminated. configure:20183: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define ABINIT_TARGET "x86_64_linux_gnu8.2" | #define HAVE_STDDEF_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_MATH_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include configure:20183: result: no configure:20183: checking for sys/malloc.h configure:20183: result: no configure:20195: checking mcheck.h usability configure:20195: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20195: $? = 0 configure:20195: result: yes configure:20195: checking mcheck.h presence configure:20195: gcc -E conftest.c configure:20195: $? = 0 configure:20195: result: yes configure:20195: checking for mcheck.h configure:20195: result: yes configure:20207: checking sys/time.h usability configure:20207: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20207: $? = 0 configure:20207: result: yes configure:20207: checking sys/time.h presence configure:20207: gcc -E conftest.c configure:20207: $? = 0 configure:20207: result: yes configure:20207: checking for sys/time.h configure:20207: result: yes configure:20219: checking sys/resource.h usability configure:20219: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20219: $? = 0 configure:20219: result: yes configure:20219: checking sys/resource.h presence configure:20219: gcc -E conftest.c configure:20219: $? = 0 configure:20219: result: yes configure:20219: checking for sys/resource.h configure:20219: result: yes configure:20235: checking for abort configure:20235: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 conftest.c:69:6: warning: conflicting types for built-in function 'abort' [-Wbuiltin-declaration-mismatch] char abort (); ^~~~~ configure:20235: $? = 0 configure:20235: result: yes configure:20246: checking for mallinfo configure:20246: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20246: $? = 0 configure:20246: result: yes configure:20263: checking size of char configure:20268: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20268: $? = 0 configure:20268: ./conftest configure:20268: $? = 0 configure:20282: result: 1 configure:20296: checking size of short configure:20301: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20301: $? = 0 configure:20301: ./conftest configure:20301: $? = 0 configure:20315: result: 2 configure:20329: checking size of int configure:20334: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20334: $? = 0 configure:20334: ./conftest configure:20334: $? = 0 configure:20348: result: 4 configure:20362: checking size of long configure:20367: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20367: $? = 0 configure:20367: ./conftest configure:20367: $? = 0 configure:20381: result: 8 configure:20395: checking size of long long configure:20400: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20400: $? = 0 configure:20400: ./conftest configure:20400: $? = 0 configure:20414: result: 8 configure:20428: checking size of unsigned int configure:20433: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20433: $? = 0 configure:20433: ./conftest configure:20433: $? = 0 configure:20447: result: 4 configure:20461: checking size of unsigned long configure:20466: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20466: $? = 0 configure:20466: ./conftest configure:20466: $? = 0 configure:20480: result: 8 configure:20494: checking size of unsigned long long configure:20499: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20499: $? = 0 configure:20499: ./conftest configure:20499: $? = 0 configure:20513: result: 8 configure:20527: checking size of float configure:20532: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20532: $? = 0 configure:20532: ./conftest configure:20532: $? = 0 configure:20546: result: 4 configure:20560: checking size of double configure:20565: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20565: $? = 0 configure:20565: ./conftest configure:20565: $? = 0 configure:20579: result: 8 configure:20593: checking size of long double configure:20598: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20598: $? = 0 configure:20598: ./conftest configure:20598: $? = 0 configure:20612: result: 16 configure:20626: checking size of size_t configure:20631: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20631: $? = 0 configure:20631: ./conftest configure:20631: $? = 0 configure:20645: result: 8 configure:20659: checking size of ptrdiff_t configure:20664: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 configure:20664: $? = 0 configure:20664: ./conftest configure:20664: $? = 0 configure:20678: result: 8 configure:20689: checking for an ANSI C-conforming const configure:20763: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20763: $? = 0 configure:20770: result: yes configure:20778: checking for size_t configure:20778: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 configure:20778: $? = 0 configure:20778: gcc -c -g -O2 -mtune=native -march=native conftest.c >&5 conftest.c: In function 'main': conftest.c:105:21: error: expected expression before ')' token if (sizeof ((size_t))) ^ configure:20778: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define ABINIT_TARGET "x86_64_linux_gnu8.2" | #define HAVE_STDDEF_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_MATH_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MCHECK_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_ABORT 1 | #define HAVE_MALLINFO 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:20778: result: yes configure:20796: checking whether the Fortran compiler accepts the ASYNCHRONOUS attribute configure:20811: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:20811: $? = 0 configure:20829: result: yes configure:20835: checking whether the Gfortran compiler supports BACKTRACE configure:20851: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:20851: $? = 0 configure:20869: result: yes configure:20875: checking whether the Fortran compiler supports GET_COMMAND_ARGUMENT configure:20898: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:20898: $? = 0 configure:20916: result: yes configure:20922: checking whether the Fortran compiler supports EXECUTE_COMMAND_LINE configure:20943: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:20943: $? = 0 configure:20961: result: yes configure:20967: checking whether the Fortran compiler supports SYSTEM configure:20982: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:20982: $? = 0 configure:21000: result: yes configure:21006: checking whether the Fortran compiler accepts the CONTIGUOUS attribute configure:21026: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21026: $? = 0 configure:21044: result: yes configure:21050: checking whether the Fortran compiler supports allocatable arrays in datatypes configure:21074: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21074: $? = 0 configure:21092: result: yes configure:21098: checking whether the Fortran compiler supports IEEE_EXCEPTIONS configure:21119: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21119: $? = 0 configure:21137: result: yes configure:21143: checking whether the Fortran compiler supports IOMSG configure:21165: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21165: $? = 0 configure:21183: result: yes configure:21189: checking whether the Fortran compiler provides the iso_c_binding module configure:21211: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21211: $? = 0 configure:21231: result: yes configure:21237: checking whether the Fortran compiler accepts exit() configure:21252: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21252: $? = 0 configure:21270: result: yes configure:21276: checking whether the Fortran compiler accepts flush() configure:21291: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21291: $? = 0 configure:21309: result: yes configure:21315: checking whether the Fortran compiler accepts flush_() configure:21330: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 /usr/bin/ld: /tmp/ccCG0N0e.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `flush__' collect2: error: ld returned 1 exit status configure:21330: $? = 1 configure: failed program was: | program main | | call flush_(1) | | end configure:21348: result: no configure:21354: checking whether the Fortran compiler accepts gamma() configure:21370: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21370: $? = 0 configure:21388: result: yes configure:21394: checking whether the Fortran compiler accepts getenv() configure:21411: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21411: $? = 0 configure:21429: result: yes configure:21447: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 /usr/bin/ld: /tmp/ccKETqNB.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `getpid_' collect2: error: ld returned 1 exit status configure:21447: $? = 1 configure: failed program was: | program main | | call getpid() | | end configure:21459: checking whether the Fortran compiler accepts getpid() configure:21461: result: no configure:21472: checking whether the Fortran compiler accepts quadruple integers configure:21488: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21488: $? = 0 configure:21507: result: yes configure:21513: checking whether the Fortran compiler supports 2008 standard in ISO_FORTRAN_ENV configure:21528: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21528: $? = 0 configure:21546: result: yes configure:21552: checking whether the Fortran compiler accepts long lines configure:21567: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21567: $? = 0 configure:21585: result: yes configure:21593: checking whether the Fortran compiler supports \newline in CPP macros configure:21610: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 conftest.F90:4:23: print *,"foo1" NEWLINE print *,"foo2" 1 Error: Syntax error in PRINT statement at (1) configure:21610: $? = 1 configure: failed program was: | program main | | # define NEWLINE \newline | print *,"foo1" NEWLINE print *,"foo2" | | | end configure:21628: result: no configure:21634: checking whether the Fortran compiler supports MOVE_ALLOC (F2003) configure:21652: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21652: $? = 0 configure:21670: result: yes configure:21676: checking whether the Fortran compiler accepts the PRIVATE attribute configure:21694: gfortran -c -g -ffree-line-length-none conftest.F90 >&5 configure:21694: $? = 0 configure:21717: result: yes configure:21723: checking whether the Fortran compiler accepts the PROTECTED attribute configure:21738: gfortran -c -g -ffree-line-length-none conftest.F90 >&5 configure:21738: $? = 0 configure:21761: result: yes configure:21767: checking whether the Fortran compiler supports stream IO configure:21791: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21791: $? = 0 configure:21809: result: yes configure:21815: checking whether the Fortran compiler accepts cpu_time() configure:21832: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 configure:21832: $? = 0 configure:21850: result: yes configure:21858: checking whether the Fortran compiler accepts etime() configure:21873: gfortran -o conftest -g -ffree-line-length-none conftest.F90 >&5 conftest.F90:3:25: call etime(1) 1 Error: Missing actual argument 'time' in call to 'etime' at (1) configure:21873: $? = 1 configure: failed program was: | program main | | call etime(1) | | end configure:21891: result: no configure:21896: checking whether to use C clock for timings configure:21898: result: no configure:21946: checking whether to enable OpenMP support configure:21948: result: no configure:22026: checking whether to build MPI code configure:22028: result: auto configure:22037: checking whether the C compiler supports MPI configure:22307: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c >&5 conftest.c:84:10: fatal error: mpi.h: No such file or directory #include "mpi.h" ^~~~~~~ compilation terminated. configure:22307: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define ABINIT_TARGET "x86_64_linux_gnu8.2" | #define HAVE_STDDEF_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_MATH_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MCHECK_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_ABORT 1 | #define HAVE_MALLINFO 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #define HAVE_FC_ASYNC 1 | #define HAVE_FC_BACKTRACE 1 | #define HAVE_FC_COMMAND_ARGUMENT 1 | #define HAVE_FC_COMMAND_LINE 1 | #define HAVE_FC_SYSTEM 1 | #define HAVE_FC_CONTIGUOUS 1 | #define HAVE_FC_ALLOCATABLE_DTARRAYS 1 | #define HAVE_FC_IEEE_EXCEPTIONS 1 | #define HAVE_FC_IOMSG 1 | #define HAVE_FC_ISO_C_BINDING 1 | #define HAVE_FC_EXIT 1 | #define HAVE_FC_FLUSH 1 | #define HAVE_FC_GAMMA 1 | #define HAVE_FC_GETENV 1 | #define HAVE_FC_INT_QUAD 1 | #define HAVE_FC_ISO_FORTRAN_2008 1 | #define HAVE_FC_LONG_LINES 1 | #define HAVE_FC_MOVE_ALLOC 1 | #define HAVE_FC_PRIVATE 1 | #define HAVE_FC_PROTECTED 1 | #define HAVE_FC_STREAM_IO 1 | #define HAVE_FC_CPUTIME 1 | /* end confdefs.h. */ | #include | #include "mpi.h" | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | | int rc; | | MPI_Init(NULL,NULL); | rc = MPI_Finalize(); | | ; | return 0; | } configure:22553: result: no configure:22559: checking whether the C++ compiler supports MPI configure:22826: g++ -o conftest -g -O2 -mtune=native -march=native conftest.cpp >&5 conftest.cpp:83:10: fatal error: mpi.h: No such file or directory #include "mpi.h" ^~~~~~~ compilation terminated. configure:22826: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define ABINIT_TARGET "x86_64_linux_gnu8.2" | #define HAVE_STDDEF_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_MATH_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MCHECK_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_ABORT 1 | #define HAVE_MALLINFO 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #define HAVE_FC_ASYNC 1 | #define HAVE_FC_BACKTRACE 1 | #define HAVE_FC_COMMAND_ARGUMENT 1 | #define HAVE_FC_COMMAND_LINE 1 | #define HAVE_FC_SYSTEM 1 | #define HAVE_FC_CONTIGUOUS 1 | #define HAVE_FC_ALLOCATABLE_DTARRAYS 1 | #define HAVE_FC_IEEE_EXCEPTIONS 1 | #define HAVE_FC_IOMSG 1 | #define HAVE_FC_ISO_C_BINDING 1 | #define HAVE_FC_EXIT 1 | #define HAVE_FC_FLUSH 1 | #define HAVE_FC_GAMMA 1 | #define HAVE_FC_GETENV 1 | #define HAVE_FC_INT_QUAD 1 | #define HAVE_FC_ISO_FORTRAN_2008 1 | #define HAVE_FC_LONG_LINES 1 | #define HAVE_FC_MOVE_ALLOC 1 | #define HAVE_FC_PRIVATE 1 | #define HAVE_FC_PROTECTED 1 | #define HAVE_FC_STREAM_IO 1 | #define HAVE_FC_CPUTIME 1 | /* end confdefs.h. */ | #include "mpi.h" | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | | MPI::Init(); | MPI::Finalize(); | | ; | return 0; | } configure:23072: result: no configure:23078: checking whether the Fortran Compiler supports MPI configure:23332: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 conftest.F90:3: Error: Can't open included file 'mpif.h' configure:23332: $? = 1 configure: failed program was: | program main | | include "mpif.h" | integer :: ierr | call mpi_init(ierr) | call mpi_finalize(ierr) | | end configure:23578: result: no configure:23587: checking whether MPI is usable configure:23589: result: no configure:23596: WARNING: MPI support is broken - disabling MPI configure:27370: checking whether to activate GPU support configure:27372: result: no configure:28087: using tarball repository /home/jim/.abinit/tarballs configure:28374: checking for the requested linear algebra support configure:28376: result: atlas configure:28410: checking whether to select a fallback for linear algebra configure:28418: result: no configure:28447: checking for BLAS support in specified libraries configure:28456: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 configure:28456: $? = 0 configure:28463: result: yes configure:28468: checking for AXPBY support in specified BLAS libraries configure:28480: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccYQSwus.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `saxpby_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:4: undefined reference to `daxpby_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:5: undefined reference to `caxpby_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:6: undefined reference to `zaxpby_' collect2: error: ld returned 1 exit status configure:28480: $? = 1 configure: failed program was: | program main | | call saxpby | call daxpby | call caxpby | call zaxpby | | end configure:28487: result: no configure:28496: checking for gemm3m in specified libraries configure:28506: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccUtbu3y.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `cgemm3m_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:4: undefined reference to `zgemm3m_' collect2: error: ld returned 1 exit status configure:28506: $? = 1 configure: failed program was: | program main | | call cgemm3m | call zgemm3m | | end configure:28513: result: no configure:28527: checking for mkl_imatcopy in specified libraries configure:28539: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccmrozvH.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `mkl_simatcopy_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:4: undefined reference to `mkl_dimatcopy_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:5: undefined reference to `mkl_cimatcopy_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:6: undefined reference to `mkl_zimatcopy_' collect2: error: ld returned 1 exit status configure:28539: $? = 1 configure: failed program was: | program main | | call mkl_simatcopy | call mkl_dimatcopy | call mkl_cimatcopy | call mkl_zimatcopy | | end configure:28546: result: no configure:28555: checking for mkl_omatcopy in specified libraries configure:28567: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccjerIrT.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `mkl_somatcopy_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:4: undefined reference to `mkl_domatcopy_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:5: undefined reference to `mkl_comatcopy_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:6: undefined reference to `mkl_zomatcopy_' collect2: error: ld returned 1 exit status configure:28567: $? = 1 configure: failed program was: | program main | | call mkl_somatcopy | call mkl_domatcopy | call mkl_comatcopy | call mkl_zomatcopy | | end configure:28574: result: no configure:28583: checking for mkl_omatadd in specified libraries configure:28595: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccezQ0L0.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `mkl_somatadd_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:4: undefined reference to `mkl_comatadd_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:5: undefined reference to `mkl_domatadd_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:6: undefined reference to `mkl_zomatadd_' collect2: error: ld returned 1 exit status configure:28595: $? = 1 configure: failed program was: | program main | | call mkl_somatadd | call mkl_comatadd | call mkl_domatadd | call mkl_zomatadd | | end configure:28602: result: no configure:28611: checking for mkl_set/get_threads in specified libraries configure:28622: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccdFVfF7.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:4: undefined reference to `mkl_get_max_threads_' /usr/bin/ld: /home/jim/abinit-8.10.2/build/conftest.F90:5: undefined reference to `mkl_set_num_threads_' collect2: error: ld returned 1 exit status configure:28622: $? = 1 configure: failed program was: | program main | | integer :: a | a = mkl_get_max_threads() | call mkl_set_num_threads | | end configure:28629: result: no configure:28640: checking for LAPACK support in specified libraries configure:28649: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 configure:28649: $? = 0 configure:28656: result: yes configure:28659: checking for LAPACKE C API support in specified libraries configure:28688: gcc -o conftest -g -O2 -mtune=native -march=native conftest.c -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 conftest.c:84:15: fatal error: lapacke.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:28688: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "ABINIT" | #define PACKAGE_TARNAME "abinit" | #define PACKAGE_VERSION "8.10.2" | #define PACKAGE_STRING "ABINIT 8.10.2" | #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" | #define PACKAGE_URL "" | #define PACKAGE "abinit" | #define VERSION "8.10.2" | #define ABINIT_VERSION "8.10.2" | #define ABINIT_VERSION_MAJOR "8" | #define ABINIT_VERSION_MINOR "10" | #define ABINIT_VERSION_MICRO "2" | #define ABINIT_VERSION_BUILD "20190206" | #define ABINIT_VERSION_BASE "8.10" | #define HAVE_OS_LINUX 1 | #define CC_GNU 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define CXX_GNU 1 | #define FC_GNU 1 | #define HAVE_FORTRAN2003 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define ABINIT_TARGET "x86_64_linux_gnu8.2" | #define HAVE_STDDEF_H 1 | #define HAVE_STDARG_H 1 | #define HAVE_STDIO_H 1 | #define HAVE_MATH_H 1 | #define HAVE_TERMIOS_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MCHECK_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_ABORT 1 | #define HAVE_MALLINFO 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_UNSIGNED_INT 4 | #define SIZEOF_UNSIGNED_LONG 8 | #define SIZEOF_UNSIGNED_LONG_LONG 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #define HAVE_FC_ASYNC 1 | #define HAVE_FC_BACKTRACE 1 | #define HAVE_FC_COMMAND_ARGUMENT 1 | #define HAVE_FC_COMMAND_LINE 1 | #define HAVE_FC_SYSTEM 1 | #define HAVE_FC_CONTIGUOUS 1 | #define HAVE_FC_ALLOCATABLE_DTARRAYS 1 | #define HAVE_FC_IEEE_EXCEPTIONS 1 | #define HAVE_FC_IOMSG 1 | #define HAVE_FC_ISO_C_BINDING 1 | #define HAVE_FC_EXIT 1 | #define HAVE_FC_FLUSH 1 | #define HAVE_FC_GAMMA 1 | #define HAVE_FC_GETENV 1 | #define HAVE_FC_INT_QUAD 1 | #define HAVE_FC_ISO_FORTRAN_2008 1 | #define HAVE_FC_LONG_LINES 1 | #define HAVE_FC_MOVE_ALLOC 1 | #define HAVE_FC_PRIVATE 1 | #define HAVE_FC_PROTECTED 1 | #define HAVE_FC_STREAM_IO 1 | #define HAVE_FC_CPUTIME 1 | /* end confdefs.h. */ | | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | zhpev_; | | ; | return 0; | } configure:28700: result: no configure:28703: checking for BLACS support in specified libraries configure:28712: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccwA768t.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `blacs_gridinit_' collect2: error: ld returned 1 exit status configure:28712: $? = 1 configure: failed program was: | program main | | call blacs_gridinit | | end configure:28719: result: no configure:28722: checking for ScaLAPACK support in specified libraries configure:28731: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/cckiLlrC.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `pzheevx_' collect2: error: ld returned 1 exit status configure:28731: $? = 1 configure: failed program was: | program main | | call pzheevx | | end configure:28738: result: no configure:28994: checking for PLASMA support in specified libraries configure:29028: result: no configure:29031: checking for MAGMA (version>=1.1.0) support in specified libraries configure:29040: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /tmp/ccwT86eO.o: in function `MAIN__': /home/jim/abinit-8.10.2/build/conftest.F90:3: undefined reference to `magmaf_zhegvd_' collect2: error: ld returned 1 exit status configure:29040: $? = 1 configure: failed program was: | program main | | call magmaf_zhegvd | | end configure:29047: result: no configure:30233: checking whether we have a serial linear algebra support configure:30235: result: yes configure:30271: checking whether we have a MPI linear algebra support configure:30273: result: no configure:30302: checking whether we have a GPU linear algebra support configure:30304: result: no configure:30562: checking for the actual linear algebra support configure:30564: result: atlas configure:30876: checking for the requested FFT support configure:30878: result: fftw3 configure:31337: gfortran -o conftest -g -ffree-line-length-none conftest.F90 -L/usr/lib/x86-64-linux-gnu -lfftw3 -lfftw3f -L/usr/lib/x86-64-linux-gnu -lfftw3 -lfftw3f -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 configure:31337: $? = 0 configure:32775: checking for the actual FFT support configure:32777: result: fftw3 configure:33119: checking for the requested transferable I/O support configure:33121: result: netcdf configure:33143: checking whether to select a fallback for netcdf configure:33151: result: no configure:33553: checking netcdf.h usability configure:33553: gcc -c -g -O2 -mtune=native -march=native -I/usr/lib/netcdf/include conftest.c >&5 configure:33553: $? = 0 configure:33553: result: yes configure:33553: checking netcdf.h presence configure:33553: gcc -E -I/usr/lib/netcdf/include conftest.c configure:33553: $? = 0 configure:33553: result: yes configure:33553: checking for netcdf.h configure:33553: result: yes configure:33708: checking for Fortran module includes configure:33730: gfortran -c -g -ffree-line-length-none -I/usr/lib/netcdf/include conftest.F90 >&5 configure:33730: $? = 0 configure:33753: result: none required configure:33778: checking whether NetCDF Fortran wrappers work configure:33790: gfortran -o conftest -g -ffree-line-length-none -I/usr/lib/netcdf/include conftest.F90 -L/usr/lib/netcdf/lib -lnetcdff -lnetcdf -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath >&5 /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-ocinternal.o): in function `ocinitialize': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/ocinternal.c:167: undefined reference to `curl_version_info' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `ocsetcurlproperties': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:283: undefined reference to `curl_easy_strerror' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `ocfetchhttpcode': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:27: undefined reference to `curl_easy_getinfo' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `ocfetchurl_file': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:44: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:49: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:54: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:59: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:63: undefined reference to `curl_easy_perform' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:74: undefined reference to `curl_easy_getinfo' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:79: undefined reference to `curl_easy_strerror' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `ocfetchurl': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:93: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:98: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:103: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:108: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:110: undefined reference to `curl_easy_perform' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:121: undefined reference to `curl_easy_getinfo' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:132: undefined reference to `curl_easy_strerror' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:113: undefined reference to `curl_easy_strerror' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `occurlopen': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:221: undefined reference to `curl_easy_init' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:225: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:229: undefined reference to `curl_easy_setopt' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `ocfetchlastmodified': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:297: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:302: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:303: undefined reference to `curl_easy_setopt' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o):/home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:304: more undefined references to `curl_easy_setopt' follow /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `ocfetchlastmodified': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:309: undefined reference to `curl_easy_perform' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:312: undefined reference to `curl_easy_getinfo' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:318: undefined reference to `curl_easy_strerror' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-http.o): in function `occurlclose': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/http.c:242: undefined reference to `curl_easy_cleanup' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-curlfunctions.o): in function `set_user_password': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/curlfunctions.c:29: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/curlfunctions.c:35: undefined reference to `curl_easy_setopt' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-curlfunctions.o): in function `set_proxy': /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/curlfunctions.c:49: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/curlfunctions.c:53: undefined reference to `curl_easy_setopt' /usr/bin/ld: /home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/curlfunctions.c:68: undefined reference to `curl_easy_setopt' /usr/bin/ld: /usr/lib/netcdf/lib/libnetcdf.a(liboc_la-curlfunctions.o):/home/jim/netcdf-4.1.1/build/libncdap3/oc/../../../libncdap3/oc/curlfunctions.c:88: more undefined references to `curl_easy_setopt' follow collect2: error: ld returned 1 exit status configure:33790: $? = 1 configure: failed program was: | program main | | use netcdf | character(len=*), parameter :: path = "dummy" | integer :: mode, ncerr, ncid | ncerr = nf90_open(path,mode,ncid) | | end configure:33797: result: no configure:34155: error: external netcdf support does not work ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_ARFLAGS_DEBUG_set= ac_cv_env_ARFLAGS_DEBUG_value= ac_cv_env_ARFLAGS_EXTRA_set= ac_cv_env_ARFLAGS_EXTRA_value= ac_cv_env_ARFLAGS_OPTIM_set= ac_cv_env_ARFLAGS_OPTIM_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_LDFLAGS_DEBUG_set= ac_cv_env_CC_LDFLAGS_DEBUG_value= ac_cv_env_CC_LDFLAGS_OPTIM_set= ac_cv_env_CC_LDFLAGS_OPTIM_value= ac_cv_env_CC_LDFLAGS_set= ac_cv_env_CC_LDFLAGS_value= ac_cv_env_CC_LIBS_DEBUG_set= ac_cv_env_CC_LIBS_DEBUG_value= ac_cv_env_CC_LIBS_OPTIM_set= ac_cv_env_CC_LIBS_OPTIM_value= ac_cv_env_CC_LIBS_set= ac_cv_env_CC_LIBS_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_DEBUG_set= ac_cv_env_CFLAGS_DEBUG_value= ac_cv_env_CFLAGS_EXTRA_set= ac_cv_env_CFLAGS_EXTRA_value= ac_cv_env_CFLAGS_OPTIM_set= ac_cv_env_CFLAGS_OPTIM_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_DEBUG_set= ac_cv_env_CPPFLAGS_DEBUG_value= ac_cv_env_CPPFLAGS_EXTRA_set= ac_cv_env_CPPFLAGS_EXTRA_value= ac_cv_env_CPPFLAGS_OPTIM_set= ac_cv_env_CPPFLAGS_OPTIM_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_DEBUG_set= ac_cv_env_CXXFLAGS_DEBUG_value= ac_cv_env_CXXFLAGS_EXTRA_set= ac_cv_env_CXXFLAGS_EXTRA_value= ac_cv_env_CXXFLAGS_OPTIM_set= ac_cv_env_CXXFLAGS_OPTIM_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_LDFLAGS_DEBUG_set= ac_cv_env_CXX_LDFLAGS_DEBUG_value= ac_cv_env_CXX_LDFLAGS_EXTRA_set= ac_cv_env_CXX_LDFLAGS_EXTRA_value= ac_cv_env_CXX_LDFLAGS_OPTIM_set= ac_cv_env_CXX_LDFLAGS_OPTIM_value= ac_cv_env_CXX_LDFLAGS_set= ac_cv_env_CXX_LDFLAGS_value= ac_cv_env_CXX_LIBS_DEBUG_set= ac_cv_env_CXX_LIBS_DEBUG_value= ac_cv_env_CXX_LIBS_OPTIM_set= ac_cv_env_CXX_LIBS_OPTIM_value= ac_cv_env_CXX_LIBS_set= ac_cv_env_CXX_LIBS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_DEBUG_set= ac_cv_env_FCFLAGS_DEBUG_value= ac_cv_env_FCFLAGS_EXTRA_set= ac_cv_env_FCFLAGS_EXTRA_value= ac_cv_env_FCFLAGS_FIXEDFORM_set= ac_cv_env_FCFLAGS_FIXEDFORM_value= ac_cv_env_FCFLAGS_FREEFORM_set= ac_cv_env_FCFLAGS_FREEFORM_value= ac_cv_env_FCFLAGS_HINTS_set= ac_cv_env_FCFLAGS_HINTS_value= ac_cv_env_FCFLAGS_MODDIR_set= ac_cv_env_FCFLAGS_MODDIR_value= ac_cv_env_FCFLAGS_OPENMP_set= ac_cv_env_FCFLAGS_OPENMP_value= ac_cv_env_FCFLAGS_OPTIM_set= ac_cv_env_FCFLAGS_OPTIM_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_LDFLAGS_DEBUG_set= ac_cv_env_FC_LDFLAGS_DEBUG_value= ac_cv_env_FC_LDFLAGS_EXTRA_set= ac_cv_env_FC_LDFLAGS_EXTRA_value= ac_cv_env_FC_LDFLAGS_OPTIM_set= ac_cv_env_FC_LDFLAGS_OPTIM_value= ac_cv_env_FC_LDFLAGS_set= ac_cv_env_FC_LDFLAGS_value= ac_cv_env_FC_LIBS_DEBUG_set= ac_cv_env_FC_LIBS_DEBUG_value= ac_cv_env_FC_LIBS_OPTIM_set= ac_cv_env_FC_LIBS_OPTIM_value= ac_cv_env_FC_LIBS_set= ac_cv_env_FC_LIBS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FPPFLAGS_DEBUG_set= ac_cv_env_FPPFLAGS_DEBUG_value= ac_cv_env_FPPFLAGS_EXTRA_set= ac_cv_env_FPPFLAGS_EXTRA_value= ac_cv_env_FPPFLAGS_OPTIM_set= ac_cv_env_FPPFLAGS_OPTIM_value= ac_cv_env_FPPFLAGS_set= ac_cv_env_FPPFLAGS_value= ac_cv_env_FPP_set= ac_cv_env_FPP_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPI_RUNNER_set= ac_cv_env_MPI_RUNNER_value= ac_cv_env_PYFLAGS_set= ac_cv_env_PYFLAGS_value= ac_cv_env_PYTHON_CPPFLAGS_set= ac_cv_env_PYTHON_CPPFLAGS_value= ac_cv_env_SERIAL_RUNNER_set= ac_cv_env_SERIAL_RUNNER_value= ac_cv_env_XPPFLAGS_DEBUG_set= ac_cv_env_XPPFLAGS_DEBUG_value= ac_cv_env_XPPFLAGS_EXTRA_set= ac_cv_env_XPPFLAGS_EXTRA_value= ac_cv_env_XPPFLAGS_OPTIM_set= ac_cv_env_XPPFLAGS_OPTIM_value= ac_cv_env_XPPFLAGS_set= ac_cv_env_XPPFLAGS_value= ac_cv_env_XPP_set= ac_cv_env_XPP_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_fc_compiler_gnu=yes ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fc_srcext_F90=none ac_cv_fortran_dummy_main=none ac_cv_func_abort=yes ac_cv_func_mallinfo=yes ac_cv_header_Python_h=yes ac_cv_header_errno_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_math_h=yes ac_cv_header_mcheck_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdarg_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_malloc_h=no ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_termios_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_BOURNE_SHELL=/bin/sh ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_MV=/bin/mv ac_cv_path_PERL=/usr/bin/perl ac_cv_path_RM=/bin/rm ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=ar ac_cv_prog_AWK=mawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_PATCH=patch ac_cv_prog_PYTHON=python ac_cv_prog_TAR=tar ac_cv_prog_TRUE_CPP=cpp ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_FC=gfortran ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes ac_cv_sizeof_char=1 ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_ptrdiff_t=8 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=8 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=8 ac_cv_sizeof_unsigned_long_long=8 ac_cv_target=x86_64-unknown-linux-gnu ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_tar_ustar=gnutar ax_cv_f90_modext=mod ## ----------------- ## ## Output variables. ## ## ----------------- ## ABINIT_BINARY_PACKAGE='abinit-8.10.2_x86_64_linux_gnu8.2' ABINIT_TARGET='x86_64_linux_gnu8.2' ABINIT_VERSION='8.10.2' ABINIT_VERSION_BASE='8.10' ABINIT_VERSION_BUILD='20190206' ABINIT_VERSION_MAJOR='8' ABINIT_VERSION_MICRO='2' ABINIT_VERSION_MINOR='10' ABI_CPPFLAGS='' ACLOCAL='${SHELL} /home/jim/abinit-8.10.2/config/gnu/missing aclocal-1.13' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' ARFLAGS=' rc' ARFLAGS_64BITS='' ARFLAGS_CMD='rc' ARFLAGS_DEBUG='' ARFLAGS_EXTRA='' ARFLAGS_HINTS='' ARFLAGS_OPTIM='' ATOMPAW_BIN='' AUTOCONF='${SHELL} /home/jim/abinit-8.10.2/config/gnu/missing autoconf' AUTOHEADER='${SHELL} /home/jim/abinit-8.10.2/config/gnu/missing autoheader' AUTOMAKE='${SHELL} /home/jim/abinit-8.10.2/config/gnu/missing automake-1.13' AWK='mawk' BAZAAR='' BOURNE_SHELL='/bin/sh' CC='gcc' CCDEPMODE='depmode=gcc3' CC_LDFLAGS=' ' CC_LDFLAGS_64BITS='' CC_LDFLAGS_DEBUG='' CC_LDFLAGS_EXTRA='' CC_LDFLAGS_GPU='' CC_LDFLAGS_HINTS='' CC_LDFLAGS_OPTIM='' CC_LIBS=' ' CC_LIBS_64BITS='' CC_LIBS_DEBUG='' CC_LIBS_EXTRA='' CC_LIBS_GPU='' CC_LIBS_HINTS='' CC_LIBS_OPTIM='' CFLAGS=' -g -O2 -mtune=native -march=native ' CFLAGS_64BITS='' CFLAGS_DEBUG='-g' CFLAGS_EXTRA='' CFLAGS_GPU='' CFLAGS_HINTS='' CFLAGS_OPTIM='-O2 -mtune=native -march=native' CPP='gcc -E' CPPFLAGS=' ' CPPFLAGS_64BITS='' CPPFLAGS_DEBUG='' CPPFLAGS_EXTRA='' CPPFLAGS_GPU='' CPPFLAGS_HINTS='' CPPFLAGS_HINTS_EXT='-P -std=c99' CPPFLAGS_OPTIM='' CXX='g++' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' -g -O2 -mtune=native -march=native ' CXXFLAGS_64BITS='' CXXFLAGS_DEBUG='-g' CXXFLAGS_EXTRA='' CXXFLAGS_GPU='' CXXFLAGS_HINTS='' CXXFLAGS_OPTIM='-O2 -mtune=native -march=native' CXX_LDFLAGS=' ' CXX_LDFLAGS_64BITS='' CXX_LDFLAGS_DEBUG='' CXX_LDFLAGS_EXTRA='' CXX_LDFLAGS_GPU='' CXX_LDFLAGS_HINTS='' CXX_LDFLAGS_OPTIM='' CXX_LIBS=' ' CXX_LIBS_64BITS='' CXX_LIBS_DEBUG='' CXX_LIBS_EXTRA='' CXX_LIBS_GPU='' CXX_LIBS_HINTS='' CXX_LIBS_OPTIM='' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DO_BUILD_01_GSL_EXT_FALSE='' DO_BUILD_01_GSL_EXT_TRUE='' DO_BUILD_01_MACROAVNEW_EXT_FALSE='' DO_BUILD_01_MACROAVNEW_EXT_TRUE='' DO_BUILD_15_GPU_TOOLBOX_FALSE='' DO_BUILD_15_GPU_TOOLBOX_TRUE='#' DO_BUILD_32_CONTRACT_FALSE='' DO_BUILD_32_CONTRACT_TRUE='#' DO_BUILD_52_MANAGE_CUDA_FALSE='' DO_BUILD_52_MANAGE_CUDA_TRUE='#' DO_BUILD_65_LOTF_BASE_FALSE='' DO_BUILD_65_LOTF_BASE_TRUE='' DO_BUILD_67_TRIQS_EXT_FALSE='' DO_BUILD_67_TRIQS_EXT_TRUE='' DO_BUILD_68_LOTF_FALSE='' DO_BUILD_68_LOTF_TRUE='' DO_BUILD_CCLOCK_FALSE='' DO_BUILD_CCLOCK_TRUE='#' DO_BUILD_EXPORTS_FALSE='' DO_BUILD_EXPORTS_TRUE='' DO_BUILD_MACROAVE_FALSE='' DO_BUILD_MACROAVE_TRUE='' DO_BUILD_PSML_FALSE='' DO_BUILD_PSML_TRUE='' DO_TEST_MPI_FALSE='' DO_TEST_MPI_TRUE='#' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F77='' FC='gfortran' FCFLAGS=' -g -ffree-line-length-none -I/usr/lib/netcdf/include' FCFLAGS_64BITS='' FCFLAGS_DEBUG='-g' FCFLAGS_EXTRA='' FCFLAGS_F90='' FCFLAGS_FIXEDFORM='-ffixed-form' FCFLAGS_FREEFORM='-ffree-form' FCFLAGS_HINTS='-ffree-line-length-none' FCFLAGS_MODDIR='-J$(abinit_moddir)' FCFLAGS_OPENMP='' FCFLAGS_OPTIM='-O2 -mtune=native -march=native' FCLIBS=' -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath' FC_LDFLAGS=' ' FC_LDFLAGS_64BITS='' FC_LDFLAGS_DEBUG='' FC_LDFLAGS_EXTRA='' FC_LDFLAGS_HINTS='' FC_LDFLAGS_OPTIM='' FC_LIBS=' -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath' FC_LIBS_64BITS='' FC_LIBS_DEBUG='' FC_LIBS_EXTRA='' FC_LIBS_HINTS='' FC_LIBS_OPTIM='' FC_NOWRAP='' FFLAGS='' FPP='' FPPFLAGS=' ' FPPFLAGS_DEBUG='' FPPFLAGS_EXTRA='' FPPFLAGS_HINTS='' FPPFLAGS_OPTIM='' GRAPHATOM_BIN='' GREP='/bin/grep' GSL_CONFIG='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS=' ' LIBOBJS='' LIBS=' -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lgfortran -lm -lquadmath ' LN_S='ln -s' LTLIBOBJS='' LTXFLAGS='' MAKEINFO='${SHELL} /home/jim/abinit-8.10.2/config/gnu/missing makeinfo' MDFLAGS='' MKDIR_P='/bin/mkdir -p' MODEXT='mod' MPI_2PROCS='-np 2' MPI_RUNNER='' MV='/bin/mv' NVCC='' NVCC_CFLAGS='' NVCC_CPPFLAGS='' NVCC_LDFLAGS='' NVCC_LIBS='' OBJEXT='o' PACKAGE='abinit' PACKAGE_BUGREPORT='https://bugs.launchpad.net/abinit/' PACKAGE_NAME='ABINIT' PACKAGE_STRING='ABINIT 8.10.2' PACKAGE_TARNAME='abinit' PACKAGE_URL='' PACKAGE_VERSION='8.10.2' PATCH='patch' PATH_SEPARATOR=':' PDFFLAGS='' PERL='/usr/bin/perl' PYFLAGS='' PYTHON='python' PYTHON_CPPFLAGS='-I/usr/include/python2.7' RANLIB='ranlib' REALPATH='true' RM='/bin/rm' SED='/bin/sed' SERIAL_RUNNER='' SET_MAKE='' SHELL='/bin/bash' STRIP='' TAR='tar' TRUE_CPP='cpp' VERSION='8.10.2' W90CHK2CHK_X_BIN='' WANNIER90_X_BIN='' XPP='' XPPFLAGS=' ' XPPFLAGS_DEBUG='' XPPFLAGS_EXTRA='' XPPFLAGS_OPTIM='' abi_ac_distcheck='' abi_ac_version='026900' abi_am_version='011304' abi_cc_path='' abi_cc_vendor='gnu' abi_cc_version='8.2' abi_cpp_path='' abi_cpu_64bits='yes' abi_cpu_bits='64' abi_cpu_model='core_i3' abi_cpu_platform='unknown' abi_cpu_spec='intel_core_i3' abi_cpu_vendor='intel' abi_cxx_path='' abi_cxx_vendor='gnu' abi_cxx_version='8.2' abi_extra_incs='' abi_fc_path='' abi_fc_vendor='gnu' abi_fc_version='8.2' abi_fc_wrap='no' abi_fpp_path='' abi_lt_version='020402' abi_m4_version='010416' abi_sys_spec='linux-x86_64' abinit_bindir='/usr/local/bin' abinit_builddir='/home/jim/abinit-8.10.2/build' abinit_chkdir='/usr/local/share/abinit/tests' abinit_datdir='/usr/local/share/abinit' abinit_docdir='/usr/local/doc/abinit' abinit_incdir='/usr/local/include' abinit_libdir='/usr/local/lib' abinit_mandir='/usr/local/share/man' abinit_moddir='/home/jim/abinit-8.10.2/build/src/mods' abinit_prefix='/usr/local' abinit_srcdir='/home/jim/abinit-8.10.2/build/..' abinit_tardir='/home/jim/.abinit/tarballs' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_FC='gfortran' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' 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src_53_ffts_incs='-I$(top_builddir)/src/53_ffts -I$(top_srcdir)/src/53_ffts' src_54_spacepar_incs='-I$(top_builddir)/src/54_spacepar -I$(top_srcdir)/src/54_spacepar' src_55_abiutil_incs='-I$(top_builddir)/src/55_abiutil -I$(top_srcdir)/src/55_abiutil' src_56_io_mpi_incs='-I$(top_builddir)/src/56_io_mpi -I$(top_srcdir)/src/56_io_mpi' src_56_mixing_incs='-I$(top_builddir)/src/56_mixing -I$(top_srcdir)/src/56_mixing' src_56_recipspace_incs='-I$(top_builddir)/src/56_recipspace -I$(top_srcdir)/src/56_recipspace' src_56_xc_incs='-I$(top_builddir)/src/56_xc -I$(top_srcdir)/src/56_xc' src_57_iopsp_parser_incs='-I$(top_builddir)/src/57_iopsp_parser -I$(top_srcdir)/src/57_iopsp_parser' src_57_iovars_incs='-I$(top_builddir)/src/57_iovars -I$(top_srcdir)/src/57_iovars' src_59_ionetcdf_incs='-I$(top_builddir)/src/59_ionetcdf -I$(top_srcdir)/src/59_ionetcdf' src_61_occeig_incs='-I$(top_builddir)/src/61_occeig -I$(top_srcdir)/src/61_occeig' src_62_cg_noabirule_incs='-I$(top_builddir)/src/62_cg_noabirule -I$(top_srcdir)/src/62_cg_noabirule' src_62_ctqmc_incs='-I$(top_builddir)/src/62_ctqmc -I$(top_srcdir)/src/62_ctqmc' src_62_iowfdenpot_incs='-I$(top_builddir)/src/62_iowfdenpot -I$(top_srcdir)/src/62_iowfdenpot' src_62_poisson_incs='-I$(top_builddir)/src/62_poisson -I$(top_srcdir)/src/62_poisson' src_62_wvl_wfs_incs='-I$(top_builddir)/src/62_wvl_wfs -I$(top_srcdir)/src/62_wvl_wfs' src_63_bader_incs='-I$(top_builddir)/src/63_bader -I$(top_srcdir)/src/63_bader' src_64_psp_incs='-I$(top_builddir)/src/64_psp -I$(top_srcdir)/src/64_psp' src_65_lotf_base_incs='-I$(top_builddir)/src/65_lotf_base -I$(top_srcdir)/src/65_lotf_base' src_65_paw_incs='-I$(top_builddir)/src/65_paw -I$(top_srcdir)/src/65_paw' src_66_nonlocal_incs='-I$(top_builddir)/src/66_nonlocal -I$(top_srcdir)/src/66_nonlocal' src_66_vdwxc_incs='-I$(top_builddir)/src/66_vdwxc -I$(top_srcdir)/src/66_vdwxc' src_66_wfs_incs='-I$(top_builddir)/src/66_wfs -I$(top_srcdir)/src/66_wfs' src_67_common_incs='-I$(top_builddir)/src/67_common -I$(top_srcdir)/src/67_common' src_67_triqs_ext_incs='-I$(top_builddir)/src/67_triqs_ext -I$(top_srcdir)/src/67_triqs_ext' src_68_dmft_incs='-I$(top_builddir)/src/68_dmft -I$(top_srcdir)/src/68_dmft' src_68_lotf_incs='-I$(top_builddir)/src/68_lotf -I$(top_srcdir)/src/68_lotf' src_68_recursion_incs='-I$(top_builddir)/src/68_recursion -I$(top_srcdir)/src/68_recursion' src_68_rsprc_incs='-I$(top_builddir)/src/68_rsprc -I$(top_srcdir)/src/68_rsprc' src_69_wfdesc_incs='-I$(top_builddir)/src/69_wfdesc -I$(top_srcdir)/src/69_wfdesc' src_70_gw_incs='-I$(top_builddir)/src/70_gw -I$(top_srcdir)/src/70_gw' src_71_bse_incs='-I$(top_builddir)/src/71_bse -I$(top_srcdir)/src/71_bse' src_71_wannier_incs='-I$(top_builddir)/src/71_wannier -I$(top_srcdir)/src/71_wannier' src_72_response_incs='-I$(top_builddir)/src/72_response -I$(top_srcdir)/src/72_response' src_77_ddb_incs='-I$(top_builddir)/src/77_ddb -I$(top_srcdir)/src/77_ddb' src_77_suscep_incs='-I$(top_builddir)/src/77_suscep -I$(top_srcdir)/src/77_suscep' src_78_effpot_incs='-I$(top_builddir)/src/78_effpot -I$(top_srcdir)/src/78_effpot' src_78_eph_incs='-I$(top_builddir)/src/78_eph -I$(top_srcdir)/src/78_eph' src_79_seqpar_mpi_incs='-I$(top_builddir)/src/79_seqpar_mpi -I$(top_srcdir)/src/79_seqpar_mpi' src_80_tdep_incs='-I$(top_builddir)/src/80_tdep -I$(top_srcdir)/src/80_tdep' src_83_cut3d_incs='-I$(top_builddir)/src/83_cut3d -I$(top_srcdir)/src/83_cut3d' src_84_fold2Bloch_incs='-I$(top_builddir)/src/84_fold2Bloch -I$(top_srcdir)/src/84_fold2Bloch' src_94_scfcv_incs='-I$(top_builddir)/src/94_scfcv -I$(top_srcdir)/src/94_scfcv' src_95_drive_incs='-I$(top_builddir)/src/95_drive -I$(top_srcdir)/src/95_drive' src_incs_incs='-I$(top_builddir)/src/incs -I$(top_srcdir)/src/incs' src_mods_incs='-I$(top_builddir)/src/mods -I$(top_srcdir)/src/mods' subdirs='' sysconfdir='${prefix}/etc' target='x86_64-unknown-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='unknown' with_algo_flavor='none' with_algo_incs='' with_algo_libs='' with_atompaw_bins='/usr/local/bin' with_atompaw_incs='-I/usr/local/include' with_atompaw_libs='-L/usr/local/lib -latompaw' with_bigdft_incs='-I/usr/local/include' with_bigdft_libs='-L/usr/local/lib -lbigdft -lPSolver-1 -labinit' with_config_file='./jim.ac' with_dft_flavor='atompaw+bigdft+libxc+wannier90' with_fc_vendor='' with_fc_version='' with_fft_flavor='fftw3' with_fft_incs='-I/usr/include' with_fft_libs='-L/usr/lib/x86-64-linux-gnu -lfftw3 -lfftw3f' with_gnu_ld='' with_gpu_cflags='' with_gpu_cppflags='' with_gpu_flavor='cuda-double' with_gpu_incs='' with_gpu_ldflags='' with_gpu_libs='' with_gpu_prefix='' with_libxc_incs='-I/usr/lib/libxc/include' with_libxc_libs='-L/usr/lib/libxc/lib -lxcf90 -lxc' with_linalg_flavor='atlas' with_linalg_incs='' with_linalg_libs='-L/usr/lib/x86_64-linux-gnu -llapack -lf77blas -lcblas -latlas' with_math_flavor='none' with_math_incs='' with_math_libs='' with_mpi_incs='' with_mpi_level='' with_mpi_libs='' with_mpi_prefix='' with_netcdf_incs='-I/usr/lib/netcdf/include' with_netcdf_libs='-L/usr/lib/netcdf/lib -lnetcdff -lnetcdf' with_psml_incs='' with_psml_libs='' with_tardir='' with_timer_flavor='abinit' with_timer_incs='' with_timer_libs='' with_trio_flavor='netcdf' with_triqs_incs='' with_triqs_libs='' with_wannier90_bins='-L/usr/local/bin' with_wannier90_incs='' with_wannier90_libs='-L/usr/local/lib -lwannier' with_yaml_incs='' with_yaml_libs='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "ABINIT" #define PACKAGE_TARNAME "abinit" #define PACKAGE_VERSION "8.10.2" #define PACKAGE_STRING "ABINIT 8.10.2" #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/" #define PACKAGE_URL "" #define PACKAGE "abinit" #define VERSION "8.10.2" #define ABINIT_VERSION "8.10.2" #define ABINIT_VERSION_MAJOR "8" #define ABINIT_VERSION_MINOR "10" #define ABINIT_VERSION_MICRO "2" #define ABINIT_VERSION_BUILD "20190206" #define ABINIT_VERSION_BASE "8.10" #define HAVE_OS_LINUX 1 #define CC_GNU 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_MALLOC_H 1 #define CXX_GNU 1 #define FC_GNU 1 #define HAVE_FORTRAN2003 1 #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ #define ABINIT_TARGET "x86_64_linux_gnu8.2" #define HAVE_STDDEF_H 1 #define HAVE_STDARG_H 1 #define HAVE_STDIO_H 1 #define HAVE_MATH_H 1 #define HAVE_TERMIOS_H 1 #define HAVE_ERRNO_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MCHECK_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_ABORT 1 #define HAVE_MALLINFO 1 #define SIZEOF_CHAR 1 #define SIZEOF_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_LONG_LONG 8 #define SIZEOF_UNSIGNED_INT 4 #define SIZEOF_UNSIGNED_LONG 8 #define SIZEOF_UNSIGNED_LONG_LONG 8 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_LONG_DOUBLE 16 #define SIZEOF_SIZE_T 8 #define SIZEOF_PTRDIFF_T 8 #define HAVE_FC_ASYNC 1 #define HAVE_FC_BACKTRACE 1 #define HAVE_FC_COMMAND_ARGUMENT 1 #define HAVE_FC_COMMAND_LINE 1 #define HAVE_FC_SYSTEM 1 #define HAVE_FC_CONTIGUOUS 1 #define HAVE_FC_ALLOCATABLE_DTARRAYS 1 #define HAVE_FC_IEEE_EXCEPTIONS 1 #define HAVE_FC_IOMSG 1 #define HAVE_FC_ISO_C_BINDING 1 #define HAVE_FC_EXIT 1 #define HAVE_FC_FLUSH 1 #define HAVE_FC_GAMMA 1 #define HAVE_FC_GETENV 1 #define HAVE_FC_INT_QUAD 1 #define HAVE_FC_ISO_FORTRAN_2008 1 #define HAVE_FC_LONG_LINES 1 #define HAVE_FC_MOVE_ALLOC 1 #define HAVE_FC_PRIVATE 1 #define HAVE_FC_PROTECTED 1 #define HAVE_FC_STREAM_IO 1 #define HAVE_FC_CPUTIME 1 #define HAVE_LINALG 1 #define HAVE_LINALG_SERIAL 1 #define HAVE_FFT_FFTW3 1 #define HAVE_FFT 1 #define HAVE_FFT_SERIAL 1 #define HAVE_NETCDF_H 1 #define HAVE_NETCDF 1 configure: exit 1